LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu02g04851	ATGAATttcaaaggaagaagaaaaatgacaaAACCTAGTTATCTGGTTGTTTATGTCATTATTCTTCTTTGTGCTTTAGCCAAAGGTGGTTCAGAGGGTAAGAGGTGGAAAAATGAAGACTTTTATAGATATTATCTTGGAATAAAGGAAGAGCAAGTGTGGAAACATTGTAGGAATGAAATGATAGAGAGGAATTATGATATCGAAGAATTTGACTTGCACTTATTGGATGAGATGGGCGAAAAGAGATCTAAATTTCTACCTCCCAATGTGAAACAAAACTTTCTAGATTGCATATTAAacagaaattttaaaattcctGTTTCGGGACAAGAGGGATATTTGCTGAAGAAGCATTATGAGTCGTTTTTTGGCTTATCAGATGGACATAGATATTTACTCTCAGAGTCACAACATAATCAGACACCACCACCAAGTCCTGATTCTGTTCCATCTGGATCATCACCGAAGCGAAAACATAATCAGACACCACCACCAAGTCCTGATTCTGTTCCATCTGGATCATCACCGAAGCGAAAAAGTCATGTTGCAGCACAAGTCAATTTGACACCTCCAGCTCCTGGACTTCCATACGATGATTTTCTGCTCACTCCGCCATTTGCACCACCACCTCCTCGTCGTGCTactttttatgatgacaaacaacGGAAATCAATTATTATTGCTGGAGTTGCATCAGGAATTATAATCTTAATAGGCTTGTTCTTATGCTGGCGCGAGGTGAAGAAGAGCAAAATACTTCAGAAAGATGACAGGCCTTTACTCCTATTAAGCTCTGGTGGTATTTCACAAAAGTCTACTGCTTTTGAAAATTCTGATAGGAGAGAACATGGTATTAACTATGGAATGAATCCTTCTACTGTTAGGAATTTGTCCTTTAAGCATGAAGTCAACAATGGTTCACTGAATGAGATAACATCATCAGATGACAAGGGACAAGTACTGGTGTCTCAATTAAAACATCCTCCAGGAAGATCAGCCCCTGAGTCTCCACCACCGCCGCCTACACCACCGCCACCACCGccacctccaccaccaccacctgcTCTTGCAACTCGGCCTCCACCTCCTCCAAAAATGTCTCGGGCTCCACCTGCTCCTCCCAAACCAATGGCAGGTAGAAACCAAAAATCACCTCTAGGACCACATCGTACTAGTGGGGGCAACGATGACTCCAATGCTTCAAAACCTAAATTAAAGCCATTTTTCTGGGACAAGGTTTCAGCAAATCCTGACCAAGCTATGGTCTGGCATGAGATTAGAGCCGGGTCATTCCAGTTCAGTGAAGAGAAGATAGAGTCTTTATTTGGCTGCACAAACCATAACagaaatgaaagaagaaaagatgCTCCTTCTTTAGAACCTTCAGTCCAGTACATTAAGATTCTTGAGCCCAAGAAAGCACAGAATTTATCGATTCTTTTACGTGCTCTGAATGTGAGCACAGAAGAAGTTACTGACGCCCTTAATGAAGGTAATGAGATTCCTGTTGAGCTCATCCAAACAGTATTGAAGATGTGGCCAACAATGGATGAGGAATCAAAACTAAAGTTATACACAGGCGACATTTCTCAACTTGGCCCTGCAGAGAGGTTTCTCAAGGCCTTGGTTGATATTCCACTAGCTTTCAAACGTCTTGAGTCTCTACTGTTCATGTTTACACTTCCAGAAGAGGCTTCAAGCATTAAGGAATGCTTTACAACATTAGAGGTTTCTTGCAACGAACTAAGAAAAAGCAGGCTCTTTCAAAAGCTATTAGAAGCAGTTCTAAAGACAGGAAACCGATTGAACGATGGAACCTATCGTGGTGGGGCTCAAGCTTTTAAGCTTGACACACTTTTGAAACTTGCAGATGTAAAAGGAACAGACGGCAAGACCACACTGTTACACTTTGTGGTTCAAGAGATCATACGTTCCGAGGGCATAAGAGCTGTAAGAACAGCGAAAGAAAGACAAAGCCTTTCTAGTATGAAAACCGAGGATTCCATTGATGATTCAAATAGGCAATCAGAAGATCACTATCGCAGCCTTGGACTTCAAGTAGTTTCAGGTCTAAGCACTGAACTAGAAGATGTGAAAAAGGCAGCAGTAATAGATGGTGATGCTCTAACAGCTGCAGTGTTGAAACTTGATCATAGATTGGGAAAAGCCGAAGAACTGTTGAATACTGATCTGAAGAATCTAGAAGAAGACAGCGAGTTTCAACATTCCCTTGCAGATTTTGTGGAGAATGCAGTAGAGGAAGTGAAATGGTTGACAGGGGAAGAGAAGAGGATAATGGCCGAGGTTAAGAACACTGCAGATTATTTTCATGGGAACGCAGGAAAAGATGAAGGGTTGCGTCTGTTTGTGATTGTACGTGATTTCTTGTTAATGTTGGACAAGGTGTGCAAAGAGGTTAAAGTATCAACCAAGACAGTAGCGATTAAGGATCCTTCTTCATGCAAGAAAGAGGCTTCTTCAATGCCATCCTCTCCGGATACGTCTCAACCATCACCTGATATGCACAGGAGGCTCTTTCCAGCCATAGCAGAGAGGAGAATACATGACTCTAGTTCCGACGACGACGATGACAATAATGAGAGATTACCAACGtag	2619	0.4028	MNFKGRRKMTKPSYLVVYVIILLCALAKGGSEGKRWKNEDFYRYYLGIKEEQVWKHCRNEMIERNYDIEEFDLHLLDEMGEKRSKFLPPNVKQNFLDCILNRNFKIPVSGQEGYLLKKHYESFFGLSDGHRYLLSESQHNQTPPPSPDSVPSGSSPKRKHNQTPPPSPDSVPSGSSPKRKSHVAAQVNLTPPAPGLPYDDFLLTPPFAPPPPRRATFYDDKQRKSIIIAGVASGIIILIGLFLCWREVKKSKILQKDDRPLLLLSSGGISQKSTAFENSDRREHGINYGMNPSTVRNLSFKHEVNNGSLNEITSSDDKGQVLVSQLKHPPGRSAPESPPPPPTPPPPPPPPPPPPALATRPPPPPKMSRAPPAPPKPMAGRNQKSPLGPHRTSGGNDDSNASKPKLKPFFWDKVSANPDQAMVWHEIRAGSFQFSEEKIESLFGCTNHNRNERRKDAPSLEPSVQYIKILEPKKAQNLSILLRALNVSTEEVTDALNEGNEIPVELIQTVLKMWPTMDEESKLKLYTGDISQLGPAERFLKALVDIPLAFKRLESLLFMFTLPEEASSIKECFTTLEVSCNELRKSRLFQKLLEAVLKTGNRLNDGTYRGGAQAFKLDTLLKLADVKGTDGKTTLLHFVVQEIIRSEGIRAVRTAKERQSLSSMKTEDSIDDSNRQSEDHYRSLGLQVVSGLSTELEDVKKAAVIDGDALTAAVLKLDHRLGKAEELLNTDLKNLEEDSEFQHSLADFVENAVEEVKWLTGEEKRIMAEVKNTADYFHGNAGKDEGLRLFVIVRDFLLMLDKVCKEVKVSTKTVAIKDPSSCKKEASSMPSSPDTSQPSPDMHRRLFPAIAERRIHDSSSDDDDDNNERLPT	872

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu02g04851	872	MobiDBLite	consensus disorder prediction	818	872	-	-
	Tsu02g04851	872	Gene3D	Formin, FH2 domain	402	828	IPR042201	-
	Tsu02g04851	872	PANTHER	FORMIN-RELATED	9	865	IPR027643	GO:0003779\|GO:0030036\|GO:0045010\|GO:0051015
	Tsu02g04851	872	SUPERFAMILY	Formin homology 2 domain (FH2 domain)	465	813	-	-
	Tsu02g04851	872	MobiDBLite	consensus disorder prediction	136	182	-	-
	Tsu02g04851	872	MobiDBLite	consensus disorder prediction	326	406	-	-
	Tsu02g04851	872	MobiDBLite	consensus disorder prediction	386	400	-	-
	Tsu02g04851	872	SMART	it6_source	396	818	IPR015425	-
	Tsu02g04851	872	MobiDBLite	consensus disorder prediction	332	379	-	-
	Tsu02g04851	872	MobiDBLite	consensus disorder prediction	655	677	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu02g04851	Tsu-Chr2	57631424	57636597	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu02g04851	398	855	FH2 protein (formin) Gene Family	AT5G54650	62.771	0.0	563

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu02g04851	-		-	lja:Lj3g3v2888350.1	833.558

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tsu02g04851	02	57631424	57636597	Tsu02g04851	02	57631424	57636597	ECH

Showing 1 to 1 of 1 entries