Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04848 ATGGACATGGATTCCACAGGTGGTGGTTCTTCTTGTTGGCTCTATGATTATGGCTATGATATTTCTGTTGCTGCACCTGATTTCATGGCTTCTGATCACTCTTCTGCTTCTGTTTTCACTTGGAATATGCCTCAGACTCATATCATCAAGCCTCCTTCCTCCAATATCAGCTTGGAAATGGAATACTCACTGGATTCAACTGTACTGGAAAATGGCCCTTCAAAGCGGTTAAGGACAGAATCATGTGCATCTGGCTCCAAGGCATGTCGCGAGAAATTGCGCAGGGATAAACTGAATGACAAGTTTCTGGAATTGAGTTCTGTCTTAGAGCCTGATACACTGCCCAAAACAGACAAAGTTACCTTATTAAATGATGCTGTTCGCGTGGTTACGCAATTAAGAAATGAAGCAGAGAGGCTGAAGGAAAGGAATGATGAATTGCGCGAAAAAGTTAAAGAACTTAAGGCTGAGAAGAATGAGCTTCGCGATGAGAAAAATAAGCTGAAGCTAGACAAAGAAAAGTTGGAACAGCAAGTGAAATTAACAAGTGTACAGTCCAGCTTTCTCTCTAATGCCATGGCTGCTAAAGGACAAGCTGCTAACCACAAACTGATGCCTTTCATTGGTTATCCTGGAATTTCAATGTGGCAGTTTATGTCACCTGCTACAGTTGATACATCACAGGATCATCTGCTTCGACCTCCCGTTGCTTAA 714 0.4244 MDMDSTGGGSSCWLYDYGYDISVAAPDFMASDHSSASVFTWNMPQTHIIKPPSSNISLEMEYSLDSTVLENGPSKRLRTESCASGSKACREKLRRDKLNDKFLELSSVLEPDTLPKTDKVTLLNDAVRVVTQLRNEAERLKERNDELREKVKELKAEKNELRDEKNKLKLDKEKLEQQVKLTSVQSSFLSNAMAAKGQAANHKLMPFIGYPGISMWQFMSPATVDTSQDHLLRPPVA 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04848 237 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 75 149 IPR036638 GO:0046983
Tsu02g04848 237 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 82 133 IPR011598 GO:0046983
Tsu02g04848 237 PANTHER BHLH TRANSCRIPTION FACTOR 8 237 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Tsu02g04848 237 Gene3D - 86 163 IPR036638 GO:0046983
Tsu02g04848 237 CDD bHLH_AtILR3_like 87 162 - -
Tsu02g04848 237 Pfam Helix-loop-helix DNA-binding domain 86 133 IPR011598 GO:0046983
Tsu02g04848 237 PANTHER BHLH DOMAIN CLASS TRANSCRIPTION FACTOR 8 237 - -
Tsu02g04848 237 Coils Coil 123 185 - -
Tsu02g04848 237 SMART finulus 88 139 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04848 Tsu-Chr2 57610751 57612775 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04848 27 237 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 52.655 4.28e-71 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu02g04848 HLH 1.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04848 - - mtr:MTR_2g089000 357.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04848 02 57610751 57612775 Tsu02g04848 02 57610751 57612775 ECH