Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04839 ATGTGCAAAGGTGCAGAACCAAAAGAACACAACTTCTTCCCAACATCAAAAGAGAGTGTTTCACCTTCAAAAACAAGAGATTCTAAATATTGTGAGCTATGTGGATTACAAGCTTCATTATATTGTCAAGCCGATGATGCATATTTATGTAGAAAATGCGACAAAAAGGTTCACGAAGCAaattttttagctcttagacaCATTAGGTGTTTTCTTTGCAATACATGTCAAAATCTTACACGACGATATTTGATCGGAGCTTCAGTTGAGATGATACTTCCGGCGCACATAAGTTGGGATAACGGAAACTTGCCTAATAATAGCACCCTCATAAAGTGTTCAAGAACTCATAACACTACTTCCATGTTTCTTTAG 375 0.352 MCKGAEPKEHNFFPTSKESVSPSKTRDSKYCELCGLQASLYCQADDAYLCRKCDKKVHEANFLALRHIRCFLCNTCQNLTRRYLIGASVEMILPAHISWDNGNLPNNSTLIKCSRTHNTTSMFL 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04839 124 CDD Bbox1_BBX-like 31 72 - -
Tsu02g04839 124 MobiDBLite consensus disorder prediction 1 25 - -
Tsu02g04839 124 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 19 97 - -
Tsu02g04839 124 ProSiteProfiles Zinc finger B-box type profile. 26 67 IPR000315 GO:0008270
Tsu02g04839 124 PANTHER B-BOX ZINC FINGER PROTEIN 29 19 97 - -
Tsu02g04839 124 Pfam B-box zinc finger 28 67 IPR000315 GO:0008270
Tsu02g04839 124 SMART bboxneu5 26 72 IPR000315 GO:0008270
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04839 31 108 C2C2-CO-like Transcription Factor Family AT3G21890 50.633 3.97e-22 82.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tsu02g04839 zf-B_box 6.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04839 - - gmx:100500322 177.948