Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04837 ATGGAAGCTCTATGTGAGTTTTGTCGGATTGTAAGAGCTATGGTTTACTGCAAGCCAGATTCTGCTCGTCTTTGCTTCCATTGCGATGGGATTGTACACTCTGCAAATTCTTTGTCTCGCAGGCATCCCCGCTCACTCCTCTGTGATAAGTGTCATTTCGACTCAGCAATCGTGCGCTGCGTCGAAAATAAACTATCTCTTTGTCAAGTTTGTGATTGGAATACAAATGACTGTTTTGTATCGGGACATAAACATGTGCTACTCACTTTCTATACTGGTTGTCCCTCTTTGGCAGAGTTAACTAAAATATGGCCACATTTGGTTGATGCAAATTCATCAAATGCTGCTTGGGAATCACCAAGTACTAGTACTTTGCCTAAAATTGAAAGCAATACCGGTTGTGATCAGCATTTGGAGCAGCAACCTGAAAAGATTGGCTTTGTTGGTTTGGCGAACGAGAAGGTGGATGAAGAACAACCGTGTGTCAAATATGAACCTTGGATTGAGAAATCTCCCATCCTTCAATCAAATTCAAACTGCACACAATACTGCAAAGATCAAGCATTTTCATTTAATCAAGACTCAAACCAATCAAAGCTTCAAGGATGCCTTGATGTTAAAGATCTTGTAATTCATGAGGGGACTAGTCTCTGTGAAGGTCTCAATGTGGATGATGTTCAATTAAACTTTGAAAATGCTGATGAAATATTTGACTGCTCTCAAAGTGCCACAAAATTCAGCCATGATGATGGAGGAATAGAATGTCTATTAATGGATAAAAACATTCCAGTCACAAAATGTATCAGTCTCATTGGGACTGCAGTAGAGGCTTCTTCATCAGTTCAACAAGATTGTATGATTTTTCCATCATCAGGGGCTGGTGGATCAACAAGTGCGATGCAGGCCATCAACAATAATGCAAATTGTGCACTTATGACTCCTAGCTGCAACAGAAGCGTGCCTCTAGGATTTCCTCCGAGTCAAATTCATTCAGGCATACCAATTCAATTACCTAACATTAATGGAGAAAGCAATGTTACAGAACTTCTAGATTGCAGTTTACCTCCAGTCTTTCATCCTGGTGAATCTACATGGGAGTCAAATTTGGAGGGTGCATGCCCTCAAGCAAGGGAtaaagccaaaatgagataccaagagaaaaagaaaactcGAACGTTTGGTAAGCAAATAAGATATGCATCTCGCAAAGCTAGGGCTGATACAAGAAAACGGGTGAAAGGTAGATTTGTTAAAGCAGGTGAAGCATATGATTATGATCCTAAATTGAGTGACATCTAA 1299 0.3926 MEALCEFCRIVRAMVYCKPDSARLCFHCDGIVHSANSLSRRHPRSLLCDKCHFDSAIVRCVENKLSLCQVCDWNTNDCFVSGHKHVLLTFYTGCPSLAELTKIWPHLVDANSSNAAWESPSTSTLPKIESNTGCDQHLEQQPEKIGFVGLANEKVDEEQPCVKYEPWIEKSPILQSNSNCTQYCKDQAFSFNQDSNQSKLQGCLDVKDLVIHEGTSLCEGLNVDDVQLNFENADEIFDCSQSATKFSHDDGGIECLLMDKNIPVTKCISLIGTAVEASSSVQQDCMIFPSSGAGGSTSAMQAINNNANCALMTPSCNRSVPLGFPPSQIHSGIPIQLPNINGESNVTELLDCSLPPVFHPGESTWESNLEGACPQARDKAKMRYQEKKKTRTFGKQIRYASRKARADTRKRVKGRFVKAGEAYDYDPKLSDI 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04837 432 CDD Bbox1_BBX-like 4 47 - -
Tsu02g04837 432 Pfam CCT motif 377 419 IPR010402 GO:0005515
Tsu02g04837 432 ProSiteProfiles CCT domain profile. 377 419 IPR010402 GO:0005515
Tsu02g04837 432 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 3 428 - -
Tsu02g04837 432 SMART bboxneu5 1 47 IPR000315 GO:0008270
Tsu02g04837 432 PANTHER CCT MOTIF FAMILY PROTEIN-RELATED 3 428 - -
Tsu02g04837 432 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04837 Tsu-Chr2 57566046 57568935 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04837 1 427 C2C2-CO-like Transcription Factor Family AT3G21880 37.931 6.79e-80 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tsu02g04837 CCT 1.8e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04837 - - mtr:MTR_2g088900 758.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04837 02 57566046 57568935 Tsu02g04837 02 57566046 57568935 ECH