Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04828 ATGGCCAATGTCAATCGCTCCTCTGAAGAAGTTTCAGCTAATACTACTTCTACAGAGGAATCCAATTCTAGTAAATCTTCCAAGGTTGAATTCTCTGAAGATGAGGAAGATCTTATCATCAGAATGTATAAACTAGTGGGGGATAGGTGGCATTTAATTGCTGGAAGAATTCCTGGAAGAACAGCTGAAGAAATAAAGAATTACTGGACTTCCAGATACTCATCAAGTAGCCAAATGAATGGAGCAAGAAAAGTTTGA 258 0.3798 MANVNRSSEEVSANTTSTEESNSSKSSKVEFSEDEEDLIIRMYKLVGDRWHLIAGRIPGRTAEEIKNYWTSRYSSSSQMNGARKV 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04828 85 CDD SANT 30 69 IPR001005 -
Tsu02g04828 85 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 7 76 - -
Tsu02g04828 85 MobiDBLite consensus disorder prediction 1 25 - -
Tsu02g04828 85 SUPERFAMILY Homeodomain-like 29 73 IPR009057 -
Tsu02g04828 85 PANTHER TRANSCRIPTION FACTOR TRY-LIKE 7 76 - -
Tsu02g04828 85 SMART sant 27 75 IPR001005 -
Tsu02g04828 85 Gene3D - 30 72 - -
Tsu02g04828 85 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 28 77 IPR017930 -
Tsu02g04828 85 MobiDBLite consensus disorder prediction 1 33 - -
Tsu02g04828 85 ProSiteProfiles Myb-like domain profile. 23 73 IPR001005 -
Tsu02g04828 85 Pfam Myb-like DNA-binding domain 28 70 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04828 Tsu-Chr2 57492975 57494546 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04828 31 74 MYB Transcription Factor Family AT5G14750 61.364 4.44e-17 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tsu02g04828 Myb_DNA-binding 4.2e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04828 - - mtr:MTR_2g088730 96.6709