Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04827 ATGAACGACCTTCTTACTGATTCATTTGTTGGTGAGGCTACTAATGGACAACCTTCTAGACAAGGTGATATTGAAATGGGAATGCAGGTTCAAAGAAGCAACTCTGATTTGGGGATGGAAACTTTTAATAAACAGaTCCAAGATGCTGATAAACAAATTGAGAAGCTGGCCGCACTCCTCCAAAAGCTAAAGGAAGCTAATGAGGAATCAAAAGCTGTTACAAAAGCATCTGCCATGAAAGCTATCAAGAAGAGAATGGAAAAAGATATTGATGAAGTTGGAAAGATTGCACATGGGGTCAAAGCGAAAATAGAAGCTATCAACAGAGATAATCTAAATAATAGACAAAAGCCTGGATGTGAGAAGGGAACTGGTATTGACAGAGCAAGGATGAATATGACAAATGCCTTGACCAAAAAGTTCAGAGATCTTATGACAGAGTTTCAGACTCTCAGACAAAGAATACAAGATGAATATCGTGAGGTTGTGGAGAGAAGAGTTATTACAGTCACGGGAACTAGACCAGATGATCAGACGATTGACCACCTGATAGAAACTGGAAACAGTGAGCAAATCTTCCAGAAGGCAATTCTTGAATCTGGCCGAGGACAGGTTGTAAGCACGGTAGAAGAAATTCAGGAGAGACATGATGCAGTGAGAGAAATTGAGAAAAAacttcttgatttacatcagATTTACCTTGACATGGCAGTGTTGGTTGATGCTCAAGGAGAAATTTTAGACAACATCGAAAGCCAGGTTTGTTTCTGA 771 0.3878 MNDLLTDSFVGEATNGQPSRQGDIEMGMQVQRSNSDLGMETFNKQIQDADKQIEKLAALLQKLKEANEESKAVTKASAMKAIKKRMEKDIDEVGKIAHGVKAKIEAINRDNLNNRQKPGCEKGTGIDRARMNMTNALTKKFRDLMTEFQTLRQRIQDEYREVVERRVITVTGTRPDDQTIDHLIETGNSEQIFQKAILESGRGQVVSTVEEIQERHDAVREIEKKLLDLHQIYLDMAVLVDAQGEILDNIESQVCF 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04827 256 SMART SynN_4 34 160 IPR006011 GO:0016020
Tsu02g04827 256 MobiDBLite consensus disorder prediction 1 25 - -
Tsu02g04827 256 PANTHER SYNTAXIN 10 254 IPR045242 -
Tsu02g04827 256 CDD SNARE_syntaxin1-like 208 254 - -
Tsu02g04827 256 Gene3D - 35 240 - -
Tsu02g04827 256 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 209 256 IPR000727 -
Tsu02g04827 256 CDD SynN 39 196 IPR006011 GO:0016020
Tsu02g04827 256 Coils Coil 39 76 - -
Tsu02g04827 256 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 10 254 - -
Tsu02g04827 256 Pfam Syntaxin 42 244 IPR006011 GO:0016020
Tsu02g04827 256 SUPERFAMILY t-snare proteins 37 254 IPR010989 GO:0016020|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04827 Tsu-Chr2 57481125 57485166 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04827 1 255 SNARE and Associated Proteins AT3G03800 62.353 6.14e-105 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04827 K08486 - gmx:100800991 447.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04827 02 57481125 57485166 Tsu02g04827 02 57481125 57485166 ECH