Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04820 ATGTTCCAGCCAAATCTAATGGAAGCTggacaacaacaacatcatcatcaacttcTACCATTTGACATGACaacaaataacaacaacaatactTCAGAAAGTGATGTTCCGAGAATCCGTGAAGATGAATTTTTCGATAGTGCTACAAAATCTGGTAATAGTGAAAATCAAGAAGCTGCTAATTCAGGTGATGATCAAGATCAACCTCGTGCTAAGAAGAAACGTTATCATCGTCATACACAACACCAGATCCAAGAAATGGAAGCtttttttaaggAATGTCCTCACCCTGATGACAAGCAAAGGAAGGAACTAAGTAGAGAGTTAGGGTTAGAGCCATTACAAGTGAAGTTTTGGTTTCAAAACAAACGAACTCAAATGAAGaCTCAACAAGAGAGGAATGAGAATACTCAACTAAGAACCGAGAATGAGAAGCTTCGTGCTGATAACATGAGGTTTAGAGAAGCTCTTAGCAATGCTTCTTGTCCTAATTGTGGTGGACCAACTGCTATTGGAGAAATGTCGTTCGATGAACATCACTTAAGGCTCGAAAATGCTCGCCTTAGAGAAGAGATTGATAGGATATCAGCCATTGCTGCGAAGTACGTCGGGAAGCCAGTAGTGAGTTATCCACTACTCTCCCCTTCATCGGTTCCACCTCGTCCTCTAGACCTTGGCATCGGTGGTTTTGGAGGACAACCAGGAATTGGTGGAGGAGATATGTATGGAGCCGGAGATCTTCTTAGATCAATAAGTGGACCAACTGAAGCTGATAAACCAATGATAATAGAACTAGCTGTTGCTGCTATGGAAGAACTCATTGGAATGGCACAATTGGGTGATCCTCTTTGGTTAACTACACTTGAAGGTGGTTCCATACTCAATGAAGAAGAATATGTTAGGTCTTTTCCTAGAGGAATTGGTCCAAAACCAGCTGGTTTTAAATGTGAAGCTTCAAGAGAAACTTCTGTTGTCATCATGAATCATGTTAACCTTGTTGAGATCCTCATGGACGTGAACCAATGGTCCACTGTTTTTTCTGGTATTGTTTCAAGAGCAATGACATTGGAAGTTCTATCAACTGGGGTGGCAGGCAACTACAATGGTGCATTACAAGtgaTGACAGCAGAACTTCAAGTACCTTCACCATTAGTGCCGACTAGAGAGAGTTATTTTGTAAGGTATTGTAAGCAACATGCTGATGGTACTTGGGCAGTAGTTGATGTTTCTTTGGACAATTTGCGCCCTAGTCCTTCTGCTAAATGTAGAAGAAGGCCTTCTGGTTGCTTAATTCAAGAAATGCCTAATGGCTATTCAAAGgttaTATGGGTGGAGCATGTAGAAGTGGATGATAGAGGTGTTCATAATCTATACAAACAACTTGTTAGCTCCGGACATGCATTTGGTGCAAAACGTTGGATTGCAACCTTAGATCGACAATGCGAACGACTTGCTAGCGCCATGGCAACCAACATTCCCACAGTCGATGTCGGCGTGATAACAAACCAAGATGGAAGAAAGAGTATGTTAAAACTAGCTGAAAGAATGTGTATAAGTTTTTGTGCTGGAGTAAGTGCTTCAACAGCACATACATGGACAACACTTTCTGGTACAGGAGCTGATGATGTAAGGGTAATGACCCGTAAAAGTGTAGATGACCCAGGAAGACCAGCTGGCATTGTCCTTAGTGCTGCTACTTCTTTTTGGCTTCCAGTTACACCAAAAAGAGTTTTTGAATTTCTTAGAGATGAAAACTCAAGAAGTGAGTGGGATATCCTTTCCAATGGAGGAGTTGTTCAAGAAATGGCACATATTGCTAATGGAAGAGATACTGGAAATTGTGTTTCTCTTCTTCGAGTGAATAGTGCAAATTCGAGCCAAAGTAACATGTTGATATTACAAGAGAGTTGCACAGACACAACAGGTTCATTTGTGATCTATGCACCTGTGGACATAGTTGCAATGAATGTGGTACTAAATGGTGGGGATCCAGATTATGTAGCACTTCTTCCATCTGGATTTGCTATACTTCCAGATGGAGGAGGTGTTGGTGGTGAAAATGGAAATGGTGGATCTTTATTAACAGTTGCATTTCAAATATTGGTTGATTCTGTTCCTACTGCAAAACTTTCCCTTGGATCTGTTGCTACAGTTAATAATCTTATTGCTTGTACTGTTGAGAGGATTAAGGCTTCTTTGTCAGGTGAAGTTGCTTGA 2217 0.3996 MFQPNLMEAGQQQHHHQLLPFDMTTNNNNNTSESDVPRIREDEFFDSATKSGNSENQEAANSGDDQDQPRAKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQQERNENTQLRTENEKLRADNMRFREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVVSYPLLSPSSVPPRPLDLGIGGFGGQPGIGGGDMYGAGDLLRSISGPTEADKPMIIELAVAAMEELIGMAQLGDPLWLTTLEGGSILNEEEYVRSFPRGIGPKPAGFKCEASRETSVVIMNHVNLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAELQVPSPLVPTRESYFVRYCKQHADGTWAVVDVSLDNLRPSPSAKCRRRPSGCLIQEMPNGYSKVIWVEHVEVDDRGVHNLYKQLVSSGHAFGAKRWIATLDRQCERLASAMATNIPTVDVGVITNQDGRKSMLKLAERMCISFCAGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPAGIVLSAATSFWLPVTPKRVFEFLRDENSRSEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCTDTTGSFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGGGVGGENGNGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLSGEVA 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04820 738 Coils Coil 129 156 - -
Tsu02g04820 738 Gene3D - 310 480 IPR023393 -
Tsu02g04820 738 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 25 735 IPR042160 -
Tsu02g04820 738 Pfam Homeodomain 73 128 IPR001356 GO:0003677
Tsu02g04820 738 ProSitePatterns 'Homeobox' domain signature. 105 128 IPR017970 GO:0000981|GO:0006355
Tsu02g04820 738 SUPERFAMILY Bet v1-like 503 730 - -
Tsu02g04820 738 Gene3D - 58 147 - -
Tsu02g04820 738 MobiDBLite consensus disorder prediction 49 64 - -
Tsu02g04820 738 MobiDBLite consensus disorder prediction 48 82 - -
Tsu02g04820 738 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 25 735 - -
Tsu02g04820 738 SUPERFAMILY Homeodomain-like 59 131 IPR009057 -
Tsu02g04820 738 SUPERFAMILY Bet v1-like 255 485 - -
Tsu02g04820 738 CDD homeodomain 73 131 IPR001356 GO:0003677
Tsu02g04820 738 Pfam START domain 265 483 IPR002913 GO:0008289
Tsu02g04820 738 CDD START_ArGLABRA2_like 259 482 - -
Tsu02g04820 738 ProSiteProfiles 'Homeobox' domain profile. 70 130 IPR001356 GO:0003677
Tsu02g04820 738 SMART START_1 264 483 IPR002913 GO:0008289
Tsu02g04820 738 SMART HOX_1 71 134 IPR001356 GO:0003677
Tsu02g04820 738 ProSiteProfiles START domain profile. 255 486 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04820 Tsu-Chr2 57393157 57400713 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04820 1 738 Homeobox Transcription Factor Family AT1G05230 77.120 0.0 1141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Tsu02g04820 START 1.1e-57 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04820 K09338 - gmx:100809556 1280.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04820 02 57393157 57400713 Tsu02g04820 02 57393157 57400713 ECH
Tsu02g04820 02 57393157 57400713 Tsu06g01212 06 11287983 11293184 PCT