Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04818 ATGGAGGTGTTTGGGATAAAGGGttttttcatctttgttttctgtttgtggATTCCAAATGAAGTTATGGCAATTATTGGAAACTCTAGTGTTTCTTCTAGACCTAATGTTTTGAAAATTGGAGCATTGTTTACTGTTGATTCTGTGATTGGAAGATCAGCTAAACCAGGAATCATGGCTGCAATTGAAGATGTTAATGCTAATAAGAGTATTCTTCCTGGTGTTAAACTTGATGTTATTTTACATGATACAAATTGCAGTGGATTTCTTGGAACAGTTGAAGCTTTGCAGTTGATGGAGAATGAAGTGGTAGCTGCAATTGGTCCACAATCTTCAGGAATAGCTCATATCATCTCTCATGTAGCTAATGAACTCCATATACCACTTCTTTCATTTGGGGCAACAGATCCAACTCTATCTTCTCTGCAGTTTCCGTATTTTGTCCGAACAACGCACAGTGACTATTTTCAGATGTATGCTATTGCAGACCTTGTTGATTATTATAGATGGAGGCAAGTAATTGCCATTTTTGTAGACGATGATAATGGAAGAAACGGTGTTTCAGTACTCGGAGACGCGCTAGCAAAGAAACGTGGCAAGATATCTTACAAAGCTGCATTATCTCCTGTTGCTACCAACAGTGATATCAGTGACATGTTAAATAGTGTTAACTTAATGGAATCAAGAGTCTTTGTTCTCCATGTTAATCCTGATAAtggtttgaatattttttcgATTGCAAAGAATCTCGGAATGATGACTAGTGGTTATGTGTGGATTGCAACAGATTGGCTTCCTTCAAAGTTGGATTCGGTGGAGCCGGTTGATGCTAACACATTAAATCTCCTTCAAGGTGTTATAGCTTTGAGGCATCACACTCCTGATACTAATCTCAGAAAAAGTTTTTTCTCTAGGTTGAAGAATATGAACGGCACGAAAACTTCAAGCTTCAACTCGTATGCTTTATATGCATATGATTCTGTTTGGTTAGCAGCTTATGCTCTTGATACTTTTCTCAAAGAAGGTGGAAACATATCTTTCTCATCTGATCCTAAATTAACTGACACAAAAGGAAGCATGTTGCATTTGTCTTCGCTTCGAGTTTTCGATGGTGGCCCGTTGTTTCTCCCTACACTTTTGAAAATGAACTTCACTGGTTTGAGTGGTCAGATTCAGTTCGATAACGGAAAGAATCTAATTCATCCATCATATGATATCCTTAACATCGGAGATTCTGGTTCCCGAAGAGTCGGTTATTGGACTAATTACTCCGGCCTATCGGTTTTAGCTCCTGAAATTTTATACAAGAAACCACCTAACACTTCAACAAGCAATCAGAAACTGTTTACTGTTTTGTGGCCTGGAGAAACTGTAGCTATACCAAAAGGATGGGTTTTTCCCAACAATGGAATGCCTTTGAGAATAGCAGTGCCTCATAGAATAAGCTACTTGGAGTTTGTTTCTAAGGACAAGAATCCACCTGGAGTTAGAGGCTATTGCATTGATGTCTTTGAAGCAGCCATAAACTTGTTGCCTTATCCCGTTCCgcgaaaatatatattatatggagATGGTAATAGAAATCCCAGCTACAGCGAGCTTGTCAATCAGGTCGCACTCAATAACTTCGATGCAGCTGTTGGAGATGTTACAATTGTTCCAAACAGAACAAGGCTTTTGGATTTCACTCAACCTTTCATGGAATCAGGGCTAGTAGTTGTTGTTCCTGTCAAGGAAATCAAATCAAGCCCTTGGGCTTTTCTCAAGCCATTCACTGCTCAAATGTGGTGTGTTACCGGCGCCTTTTTCCTTTTTGTCGGAGCTGTTGTATGGATTCTTGAGCACAGACACAATCCTGAGTTCCGAGGTCCACCTAAGAAGCAACTTATGACAATCTTTTGGTTTACTTTCTCAACAATGTTTTTCTCACACAGAGAGAACACTGTGAGTGGTCTTGGGCGATTCGTGTTAATCATATGGCTTTTTGTAGTATTAATCATCAATTCAAGCTACACGGCAAGTTTAACATCGATCCTCACAGTGCAGCAACTATCGTCACAAATTGAAGGAATTGACAGCTTGATATCAGGTACTCAACCAATAGGAATTCAAGATGGATCATTTGCAAGGAGGTATCTGATAGATGAACTCAATATACAACCATCAAGGATAATTTCATTGAAAGATCCAAAGGCGTATGTCGATGCCCTTACGCGTGGACCTAAAGGAGGAGGAGTTGTGGCTATTGTTGATGAACTTCCTTATATTGAAATCTTTATGTCTAGTACCAACTGCAAGTTCAGAACTGTTGGAAATGTGTTCACTAAAAGTGGTTGGGGATTTGGATTCCAGAGGGACTCACCCCTTGCAGTCGATATGTCAACTGCCATACTTCAACTCTCAGAAAATGGTGACCTGCAAAAGATCCATGACAAATggctttcaaaacaaaattgtgcTGCAAAAGTCGACGACGTTGATTCAAATGAACTATCTCTTAGTAGCTTCTGGGGTCTCTTTCTTATATGTGGCATTGCATGCCTCATTGCTATGACTGTATTCTTTGTTAGAGTGTTCTGTCAATACATGAAATACATCCCAGAGAGTGAGGATGAAGGTGACCCAGAAAATCCGCCAAATAGGTCTAGAAGAAGTTTTCGATCTTCAAGAAGCTTCAAAGACTTGATTGAATTTGTGGATAAGAGAGAAAGAGTAATCAAGGAGCTACTTAGGGAGAAGAGTAAGAAAAGGAGACGTGACGACGATCAATTTAGTTCACCTACCTAA 2787 0.385 MEVFGIKGFFIFVFCLWIPNEVMAIIGNSSVSSRPNVLKIGALFTVDSVIGRSAKPGIMAAIEDVNANKSILPGVKLDVILHDTNCSGFLGTVEALQLMENEVVAAIGPQSSGIAHIISHVANELHIPLLSFGATDPTLSSLQFPYFVRTTHSDYFQMYAIADLVDYYRWRQVIAIFVDDDNGRNGVSVLGDALAKKRGKISYKAALSPVATNSDISDMLNSVNLMESRVFVLHVNPDNGLNIFSIAKNLGMMTSGYVWIATDWLPSKLDSVEPVDANTLNLLQGVIALRHHTPDTNLRKSFFSRLKNMNGTKTSSFNSYALYAYDSVWLAAYALDTFLKEGGNISFSSDPKLTDTKGSMLHLSSLRVFDGGPLFLPTLLKMNFTGLSGQIQFDNGKNLIHPSYDILNIGDSGSRRVGYWTNYSGLSVLAPEILYKKPPNTSTSNQKLFTVLWPGETVAIPKGWVFPNNGMPLRIAVPHRISYLEFVSKDKNPPGVRGYCIDVFEAAINLLPYPVPRKYILYGDGNRNPSYSELVNQVALNNFDAAVGDVTIVPNRTRLLDFTQPFMESGLVVVVPVKEIKSSPWAFLKPFTAQMWCVTGAFFLFVGAVVWILEHRHNPEFRGPPKKQLMTIFWFTFSTMFFSHRENTVSGLGRFVLIIWLFVVLIINSSYTASLTSILTVQQLSSQIEGIDSLISGTQPIGIQDGSFARRYLIDELNIQPSRIISLKDPKAYVDALTRGPKGGGVVAIVDELPYIEIFMSSTNCKFRTVGNVFTKSGWGFGFQRDSPLAVDMSTAILQLSENGDLQKIHDKWLSKQNCAAKVDDVDSNELSLSSFWGLFLICGIACLIAMTVFFVRVFCQYMKYIPESEDEGDPENPPNRSRRSFRSSRSFKDLIEFVDKRERVIKELLREKSKKRRRDDDQFSSPT 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04818 928 Gene3D - 59 401 - -
Tsu02g04818 928 SUPERFAMILY Periplasmic binding protein-like II 448 816 - -
Tsu02g04818 928 Gene3D - 760 821 - -
Tsu02g04818 928 Gene3D - 468 584 - -
Tsu02g04818 928 Pfam Receptor family ligand binding region 58 409 IPR001828 -
Tsu02g04818 928 Coils Coil 899 919 - -
Tsu02g04818 928 Gene3D - 585 704 - -
Tsu02g04818 928 Pfam Bacterial extracellular solute-binding proteins, family 3 530 815 IPR001638 -
Tsu02g04818 928 SUPERFAMILY Periplasmic binding protein-like I 33 465 IPR028082 -
Tsu02g04818 928 CDD GluR_Plant 472 814 - -
Tsu02g04818 928 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 324 336 - -
Tsu02g04818 928 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 51 67 - -
Tsu02g04818 928 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 111 139 - -
Tsu02g04818 928 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 26 913 - -
Tsu02g04818 928 SMART GluR_14 474 816 IPR001320 GO:0015276|GO:0016020
Tsu02g04818 928 Pfam Ligand-gated ion channel 816 847 IPR001320 GO:0015276|GO:0016020
Tsu02g04818 928 PIRSF IGluLR_plant 6 927 IPR017103 -
Tsu02g04818 928 CDD PBP1_GABAb_receptor_plant 39 428 IPR044440 -
Tsu02g04818 928 Gene3D - 153 426 - -
Tsu02g04818 928 PANTHER GLUTAMATE RECEPTOR 3.4 26 913 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04818 Tsu-Chr2 57378898 57384092 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04818 34 785 Ion Channels AT1G05200 68.783 0.0 1120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04818 K05387 - gmx:100799912 1432.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04818 02 57378898 57384092 Tsu02g04818 02 57378898 57384092 ECH