LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu02g04817	ATGGCTTCATCCAACAAGAATGTTGCTGAGGAACCACTTTTGTTCAACCATAGCGCTACGCCGTCAAAGCATAATGAATCCGATGGCGAGCTTGAGAGAATACTATCCGACACGACTGTGCCATACTTCAGCCGTGTCGGCTCCGCCTCGTTGATTGAGCTCAAACTCTTGTTCATCATAGCTGCTCCTGCTGTTTTTGTTTATCTTATTAACTATGTTATGTCTATGTCCACTCAAATCTTATCCGGCCACCTTGGGACTCTTGAACTTGCCGCGGCGTCTCTCGGTAACACCGGTATCCAAATCTTTGCTTATGGCCTCATGTTGGGTATGGGAAGTGCAGTTGAGACACTATGTGGACAAGCATTTGGAGCTGAAAGATATGGCATGCTAGGACTATATTTACAAAGATCAACCATTCTTCTAACAATAACTGGTTTTTTTCTAACCGTTATTTACGTCTTTAGCGAACCGATCCTAGTATTCATCGGACAATCACCAAGAATCGCTTCTGCAGCCGCACTTTTTGTCTACGGACTTATCCCACAAATATTCGCTTATGCAATCAATTTTCCAATCCAAAAATTCCTTCAAGCACAAAGCATTGTTCTACCAAGTGCTTATATTTCAGCAGCAACTTTAGTTGTTCATATAATATTGAGTTGGGTTGTTATCTATAAGATTGGTTTGGGCTTATTGGGTGCTTCATTGGTTTTGAGTTTTTCTTGGTGGATTATTGTTATTgctcaatttatttatattgtgaaGAGTGAAAAGTGTAAGAGGACATGGAATGGGTTTACTTTGGAGGCATTTTCGGGGTTGCCGGAGTTTTTTAAACTGTCGGCTGCATCTGCGGTTATGTTGTGTCTTGAAACTTGGTACCTTCAAATTCTTGTTTTGCTTGCTGGGCTTCTTCCTGACCCTGAGGTGGCTCTTGATTCTCTTTCTATTTGTACCACAATTTCTGGATGGGTTTTCATGATCTCAGTTGGATTCAATGCAGCTGCAAGTGTGAGAGTGAGCAATGAATTGGGAGCAAGAAATCCAAAATCAGCATCATTTTCAGTTGTGGTGGTGACATTGATATCATTTGTAATAGCAGTAATACTAGCACTGGTTGTGCTTGCATTGAGAGATGTTATCAGCTATGTTTTCACAGAAGGTGAAGTTGTTGCTGCGGCTGTCTCAGATCTTTGTCCACTCCTCTGTCTTACTCTTGTCCTCAATGGCATTCAGCCTGTCTTATCTGGGGTTGCTGTTGGCTGTGGATGGCAAGCATTTGTTGCTTATGTGAATGTAGGCTGCTATTATATAGTTGGCATACCATTGGGCGCAGTTCTCggattttatttcaattttggcGCTAAGGGAATAtggcttggaatgattggtggAACATTTATGCAGACAATTATTCTAATTTGGGTCACATTTAGAACAGATTGGAACAAAGAGGTGGAAGTAGCAGCCACGAGTGAAAAGCCTGAAAGTGTGAATATTGGAGCAGTTTTCACTTTTGATTCTGTCATAGGTAGAGTTGCAAAAGCAGCTATGGAAATGGCTGTTTCTGATGTCAATTCTGACCCAATAGTTCTTAATGGGACTAAGCTTAACTTGATAATGAAGGATGGTAGGTGTAATGCTTTTTTGGGATCAACTGGAGCTTTTCAGGTACTTGAGCAAGGGGTTGCAGCCATAATTGGACCACAGTCATCTGCCATAGCTCATTCGATTTCTCAAATAGCTGATGCTGTCAAAGTCCCCCTTATTTCATATGCTGCAACTGATCCAACCCTATCATCCCTTCAGTTTCCTCTCTTTTTTCGCACCGTACAAAGTGACTCAGAGCAAATGGCTGCAATGGCCAATCTTATCGACTTCAACGGATGGAAAGAAGTCATTGTTGTCTTCTTGGATGACGACTATGGAAGAAATGGAGTATCTGCTTTGAGTGATGAACTCGAAAATAGGAGATTGAAAATATCTCACAAACTAGCTTTGAGTATTCATTTCGACCTAGATGAAATCACTAAGTTGCTCAATCAAACCAAAGTATTTAACCCTCGTGTTTTTGTCGTTCATATCAACCCTGATCCTAGATTGAGGATTTTTTCCGTTGCTCACAAACTTCAAATGATGACTAGTGAGTATGTTTGGCTTGTCACAGATTGGCTCGCTGCTACCCTATATTCATTTTCGCCAGTGAATCAGAAATCTCTTAGCATTGTCGAAGGAGTTGTTGGTCTTCGTCAACACATCCCGGATTCTAGTAAAAAAAGAGATTTTGTTTCTCGAtggaaaaaaatgcaaaaacgTGTAGCAAATACTAGTTGGAATTCCTATGGATTTTTCGCTTATGATACAGTTTGGGCAGTTGCACATTCAATCGATAAATTTCTGAAAGTGCATGACAATATTACCTTTTCGCTTCGTGACAACAATATGGTACCTCATACCGAAGGAATTGGTATTCAGCTTGAGAAGCTCAAAACCTTTGTCAATGGATCTGATTTTGTTAACATATTATCACTATCAAATTTTAGTGGCGTGAGTGGTCAAATTCGGTTTAGTTCAGACAGAAATGTCATTAGTAGTGGTTATGATGTTATCAATATCAATCAGATGAAAATTAATAGGGTTGGTTATTGGTCTAATCATTCAGGATTTTCAGTTGTTCCCCCCGAAATTCTTGCGAAACAGAAACATCCCAGGGTTTCTGTAGATCAGAAGCTTGAAAATATTACTTGGCCAGGTGGGAAAACAGAAAGACCGCGCGGTTGGGTGATTGCGGATAATGCAAAGCCACTGAGAATTGGAGTGCCGAGGAGAGCGAGTTTCGTTGAATTTGTAACTGAACTGCAAGATAGTCATAAGATTCAAGGGTATTGTATCGATATCTTCATGAAAGCCTTGGAATTTATTCCATATGAAATTCCTTTTGTATTCAAGCCTGTTGGGAATGgaaaatcaaatccaaattaTGATTCACTTGTCAAAAAGATTGACCAAAATGTATATGATGCAGTTGTTGGAGACATTGCGATTGTGACGAACCGAACAAAAATTGTGGACTTTTCTCAACCTTTTGCATCATCTAGCCTTGTTATAGTGGCTCCTATCAACAGTTCAAAATCAAATGCTTGGGTATTCCTCAGACCATTCTCAGCAGATATGTGGTGTATCATTGGTGCATCATTTCTCATGATTGGAGTTGTTATATGGATTCTGGAACACCGAGTCAACGATGAGTTCCGTGGTCCTCCTAAGAAACAACTTGTCACAATGTTTATGTACGCTGTTTTTCATAATACCGTAAGCTCGCTGTCTAAAATGGTGTTGATAGTATGGCTTTTCCTACTGATGGTGATAACAGCTAGCTATACAGCAAGCTTGACTTCAATTCTCACGGTGGAACAACTTTCATCACCAATCACAGGAATCGATAGCTTGATTGCAAGTAACTGGCCTATTGGATACCAAGTAGGGTCGTTTGCTTACAGCTATCTGACAGATAATCTTTATGTATCAAAATCAAGACTTGTTTCCTTAGGCTCCCCTGAGGAATATGCGGTAGCACTTCGGAATGGACCATCTGGTGGTGGCGTAGCAGCTATCGTCGACGAGCTTCCGTATGTGGAATTGTTTCTGTCAAAAGAAACTGAATTCGGTATTATCGGTCAGCCATTTACCAGAAGCAGTTGGGGATTTGCTTTTCAAAGAGACTCGCCTCTTGCACTTGACATGTCAACTGCGATATTGAAACTAGCCGAGAGTGGAGAGCTTCAAAAGATACATGAGAAATGGTTTTGCAAGATGGGTTGTCCCGGCGAAAGGAAAAGTAACCCTAAACCAGACCAACTTCATCTGAGCAGCTTTTGGGGTCTATATCTCTCATGCGCTGTCATCTCTGTCGTAGCACTTATTCTGTTTCTGCTGCGAATCATTAGCCAATATGTTGGCTTCAAACAAAGACAAAAGGACATTGTTGCTCCATCCTCGGAACAATCGGAAAGTCATTGTTCCCGGGTTGTTGTTAACTTCTTTAACTTCATCGATAAAAAGGAAGATGCTATCAAGAAAATGTTCACTCAATGTGACAATCCTCATAACCCTAACTGA	4122	0.3988	MASSNKNVAEEPLLFNHSATPSKHNESDGELERILSDTTVPYFSRVGSASLIELKLLFIIAAPAVFVYLINYVMSMSTQILSGHLGTLELAAASLGNTGIQIFAYGLMLGMGSAVETLCGQAFGAERYGMLGLYLQRSTILLTITGFFLTVIYVFSEPILVFIGQSPRIASAAALFVYGLIPQIFAYAINFPIQKFLQAQSIVLPSAYISAATLVVHIILSWVVIYKIGLGLLGASLVLSFSWWIIVIAQFIYIVKSEKCKRTWNGFTLEAFSGLPEFFKLSAASAVMLCLETWYLQILVLLAGLLPDPEVALDSLSICTTISGWVFMISVGFNAAASVRVSNELGARNPKSASFSVVVVTLISFVIAVILALVVLALRDVISYVFTEGEVVAAAVSDLCPLLCLTLVLNGIQPVLSGVAVGCGWQAFVAYVNVGCYYIVGIPLGAVLGFYFNFGAKGIWLGMIGGTFMQTIILIWVTFRTDWNKEVEVAATSEKPESVNIGAVFTFDSVIGRVAKAAMEMAVSDVNSDPIVLNGTKLNLIMKDGRCNAFLGSTGAFQVLEQGVAAIIGPQSSAIAHSISQIADAVKVPLISYAATDPTLSSLQFPLFFRTVQSDSEQMAAMANLIDFNGWKEVIVVFLDDDYGRNGVSALSDELENRRLKISHKLALSIHFDLDEITKLLNQTKVFNPRVFVVHINPDPRLRIFSVAHKLQMMTSEYVWLVTDWLAATLYSFSPVNQKSLSIVEGVVGLRQHIPDSSKKRDFVSRWKKMQKRVANTSWNSYGFFAYDTVWAVAHSIDKFLKVHDNITFSLRDNNMVPHTEGIGIQLEKLKTFVNGSDFVNILSLSNFSGVSGQIRFSSDRNVISSGYDVININQMKINRVGYWSNHSGFSVVPPEILAKQKHPRVSVDQKLENITWPGGKTERPRGWVIADNAKPLRIGVPRRASFVEFVTELQDSHKIQGYCIDIFMKALEFIPYEIPFVFKPVGNGKSNPNYDSLVKKIDQNVYDAVVGDIAIVTNRTKIVDFSQPFASSSLVIVAPINSSKSNAWVFLRPFSADMWCIIGASFLMIGVVIWILEHRVNDEFRGPPKKQLVTMFMYAVFHNTVSSLSKMVLIVWLFLLMVITASYTASLTSILTVEQLSSPITGIDSLIASNWPIGYQVGSFAYSYLTDNLYVSKSRLVSLGSPEEYAVALRNGPSGGGVAAIVDELPYVELFLSKETEFGIIGQPFTRSSWGFAFQRDSPLALDMSTAILKLAESGELQKIHEKWFCKMGCPGERKSNPKPDQLHLSSFWGLYLSCAVISVVALILFLLRIISQYVGFKQRQKDIVAPSSEQSESHCSRVVVNFFNFIDKKEDAIKKMFTQCDNPHNPN	1373

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu02g04817	1373	Gene3D	-	931	1047	-	-
	Tsu02g04817	1373	Gene3D	-	1048	1170	-	-
	Tsu02g04817	1373	TIGRFAM	matE: MATE efflux family protein	63	460	IPR002528	GO:0015297\|GO:0016020\|GO:0042910\|GO:0055085
	Tsu02g04817	1373	CDD	PBP1_GABAb_receptor_plant	500	894	IPR044440	-
	Tsu02g04817	1373	Pfam	MatE	63	223	IPR002528	GO:0015297\|GO:0016020\|GO:0042910\|GO:0055085
	Tsu02g04817	1373	Pfam	MatE	285	446	IPR002528	GO:0015297\|GO:0016020\|GO:0042910\|GO:0055085
	Tsu02g04817	1373	SUPERFAMILY	Periplasmic binding protein-like I	495	929	IPR028082	-
	Tsu02g04817	1373	SMART	GluR_14	938	1272	IPR001320	GO:0015276\|GO:0016020
	Tsu02g04817	1373	Pfam	Receptor family ligand binding region	516	874	IPR001828	-
	Tsu02g04817	1373	Gene3D	-	517	865	-	-

Showing 1 to 10 of 22 entries

Previous1 2 3Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu02g04817	Tsu-Chr2	57360867	57371811	Tandem

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu02g04817	489	1371	Ion Channels	AT2G32400	54.302	0.0	1000

Showing 1 to 1 of 1 entries

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu02g04817	K05387		-	gmx:100796389	1400.96

Showing 1 to 1 of 1 entries

Event-related genes

Show entries

Search:

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tsu02g04817	02	57360867	57371811	Tsu02g04817	02	57360867	57371811	ECH

Showing 1 to 1 of 1 entries