Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04817 ATGGCTTCATCCAACAAGAATGTTGCTGAGGAACCACTTTTGTTCAACCATAGCGCTACGCCGTCAAAGCATAATGAATCCGATGGCGAGCTTGAGAGAATACTATCCGACACGACTGTGCCATACTTCAGCCGTGTCGGCTCCGCCTCGTTGATTGAGCTCAAACTCTTGTTCATCATAGCTGCTCCTGCTGTTTTTGTTTATCTTATTAACTATGTTATGTCTATGTCCACTCAAATCTTATCCGGCCACCTTGGGACTCTTGAACTTGCCGCGGCGTCTCTCGGTAACACCGGTATCCAAATCTTTGCTTATGGCCTCATGTTGGGTATGGGAAGTGCAGTTGAGACACTATGTGGACAAGCATTTGGAGCTGAAAGATATGGCATGCTAGGACTATATTTACAAAGATCAACCATTCTTCTAACAATAACTGGTTTTTTTCTAACCGTTATTTACGTCTTTAGCGAACCGATCCTAGTATTCATCGGACAATCACCAAGAATCGCTTCTGCAGCCGCACTTTTTGTCTACGGACTTATCCCACAAATATTCGCTTATGCAATCAATTTTCCAATCCAAAAATTCCTTCAAGCACAAAGCATTGTTCTACCAAGTGCTTATATTTCAGCAGCAACTTTAGTTGTTCATATAATATTGAGTTGGGTTGTTATCTATAAGATTGGTTTGGGCTTATTGGGTGCTTCATTGGTTTTGAGTTTTTCTTGGTGGATTATTGTTATTgctcaatttatttatattgtgaaGAGTGAAAAGTGTAAGAGGACATGGAATGGGTTTACTTTGGAGGCATTTTCGGGGTTGCCGGAGTTTTTTAAACTGTCGGCTGCATCTGCGGTTATGTTGTGTCTTGAAACTTGGTACCTTCAAATTCTTGTTTTGCTTGCTGGGCTTCTTCCTGACCCTGAGGTGGCTCTTGATTCTCTTTCTATTTGTACCACAATTTCTGGATGGGTTTTCATGATCTCAGTTGGATTCAATGCAGCTGCAAGTGTGAGAGTGAGCAATGAATTGGGAGCAAGAAATCCAAAATCAGCATCATTTTCAGTTGTGGTGGTGACATTGATATCATTTGTAATAGCAGTAATACTAGCACTGGTTGTGCTTGCATTGAGAGATGTTATCAGCTATGTTTTCACAGAAGGTGAAGTTGTTGCTGCGGCTGTCTCAGATCTTTGTCCACTCCTCTGTCTTACTCTTGTCCTCAATGGCATTCAGCCTGTCTTATCTGGGGTTGCTGTTGGCTGTGGATGGCAAGCATTTGTTGCTTATGTGAATGTAGGCTGCTATTATATAGTTGGCATACCATTGGGCGCAGTTCTCggattttatttcaattttggcGCTAAGGGAATAtggcttggaatgattggtggAACATTTATGCAGACAATTATTCTAATTTGGGTCACATTTAGAACAGATTGGAACAAAGAGGTGGAAGTAGCAGCCACGAGTGAAAAGCCTGAAAGTGTGAATATTGGAGCAGTTTTCACTTTTGATTCTGTCATAGGTAGAGTTGCAAAAGCAGCTATGGAAATGGCTGTTTCTGATGTCAATTCTGACCCAATAGTTCTTAATGGGACTAAGCTTAACTTGATAATGAAGGATGGTAGGTGTAATGCTTTTTTGGGATCAACTGGAGCTTTTCAGGTACTTGAGCAAGGGGTTGCAGCCATAATTGGACCACAGTCATCTGCCATAGCTCATTCGATTTCTCAAATAGCTGATGCTGTCAAAGTCCCCCTTATTTCATATGCTGCAACTGATCCAACCCTATCATCCCTTCAGTTTCCTCTCTTTTTTCGCACCGTACAAAGTGACTCAGAGCAAATGGCTGCAATGGCCAATCTTATCGACTTCAACGGATGGAAAGAAGTCATTGTTGTCTTCTTGGATGACGACTATGGAAGAAATGGAGTATCTGCTTTGAGTGATGAACTCGAAAATAGGAGATTGAAAATATCTCACAAACTAGCTTTGAGTATTCATTTCGACCTAGATGAAATCACTAAGTTGCTCAATCAAACCAAAGTATTTAACCCTCGTGTTTTTGTCGTTCATATCAACCCTGATCCTAGATTGAGGATTTTTTCCGTTGCTCACAAACTTCAAATGATGACTAGTGAGTATGTTTGGCTTGTCACAGATTGGCTCGCTGCTACCCTATATTCATTTTCGCCAGTGAATCAGAAATCTCTTAGCATTGTCGAAGGAGTTGTTGGTCTTCGTCAACACATCCCGGATTCTAGTAAAAAAAGAGATTTTGTTTCTCGAtggaaaaaaatgcaaaaacgTGTAGCAAATACTAGTTGGAATTCCTATGGATTTTTCGCTTATGATACAGTTTGGGCAGTTGCACATTCAATCGATAAATTTCTGAAAGTGCATGACAATATTACCTTTTCGCTTCGTGACAACAATATGGTACCTCATACCGAAGGAATTGGTATTCAGCTTGAGAAGCTCAAAACCTTTGTCAATGGATCTGATTTTGTTAACATATTATCACTATCAAATTTTAGTGGCGTGAGTGGTCAAATTCGGTTTAGTTCAGACAGAAATGTCATTAGTAGTGGTTATGATGTTATCAATATCAATCAGATGAAAATTAATAGGGTTGGTTATTGGTCTAATCATTCAGGATTTTCAGTTGTTCCCCCCGAAATTCTTGCGAAACAGAAACATCCCAGGGTTTCTGTAGATCAGAAGCTTGAAAATATTACTTGGCCAGGTGGGAAAACAGAAAGACCGCGCGGTTGGGTGATTGCGGATAATGCAAAGCCACTGAGAATTGGAGTGCCGAGGAGAGCGAGTTTCGTTGAATTTGTAACTGAACTGCAAGATAGTCATAAGATTCAAGGGTATTGTATCGATATCTTCATGAAAGCCTTGGAATTTATTCCATATGAAATTCCTTTTGTATTCAAGCCTGTTGGGAATGgaaaatcaaatccaaattaTGATTCACTTGTCAAAAAGATTGACCAAAATGTATATGATGCAGTTGTTGGAGACATTGCGATTGTGACGAACCGAACAAAAATTGTGGACTTTTCTCAACCTTTTGCATCATCTAGCCTTGTTATAGTGGCTCCTATCAACAGTTCAAAATCAAATGCTTGGGTATTCCTCAGACCATTCTCAGCAGATATGTGGTGTATCATTGGTGCATCATTTCTCATGATTGGAGTTGTTATATGGATTCTGGAACACCGAGTCAACGATGAGTTCCGTGGTCCTCCTAAGAAACAACTTGTCACAATGTTTATGTACGCTGTTTTTCATAATACCGTAAGCTCGCTGTCTAAAATGGTGTTGATAGTATGGCTTTTCCTACTGATGGTGATAACAGCTAGCTATACAGCAAGCTTGACTTCAATTCTCACGGTGGAACAACTTTCATCACCAATCACAGGAATCGATAGCTTGATTGCAAGTAACTGGCCTATTGGATACCAAGTAGGGTCGTTTGCTTACAGCTATCTGACAGATAATCTTTATGTATCAAAATCAAGACTTGTTTCCTTAGGCTCCCCTGAGGAATATGCGGTAGCACTTCGGAATGGACCATCTGGTGGTGGCGTAGCAGCTATCGTCGACGAGCTTCCGTATGTGGAATTGTTTCTGTCAAAAGAAACTGAATTCGGTATTATCGGTCAGCCATTTACCAGAAGCAGTTGGGGATTTGCTTTTCAAAGAGACTCGCCTCTTGCACTTGACATGTCAACTGCGATATTGAAACTAGCCGAGAGTGGAGAGCTTCAAAAGATACATGAGAAATGGTTTTGCAAGATGGGTTGTCCCGGCGAAAGGAAAAGTAACCCTAAACCAGACCAACTTCATCTGAGCAGCTTTTGGGGTCTATATCTCTCATGCGCTGTCATCTCTGTCGTAGCACTTATTCTGTTTCTGCTGCGAATCATTAGCCAATATGTTGGCTTCAAACAAAGACAAAAGGACATTGTTGCTCCATCCTCGGAACAATCGGAAAGTCATTGTTCCCGGGTTGTTGTTAACTTCTTTAACTTCATCGATAAAAAGGAAGATGCTATCAAGAAAATGTTCACTCAATGTGACAATCCTCATAACCCTAACTGA 4122 0.3988 MASSNKNVAEEPLLFNHSATPSKHNESDGELERILSDTTVPYFSRVGSASLIELKLLFIIAAPAVFVYLINYVMSMSTQILSGHLGTLELAAASLGNTGIQIFAYGLMLGMGSAVETLCGQAFGAERYGMLGLYLQRSTILLTITGFFLTVIYVFSEPILVFIGQSPRIASAAALFVYGLIPQIFAYAINFPIQKFLQAQSIVLPSAYISAATLVVHIILSWVVIYKIGLGLLGASLVLSFSWWIIVIAQFIYIVKSEKCKRTWNGFTLEAFSGLPEFFKLSAASAVMLCLETWYLQILVLLAGLLPDPEVALDSLSICTTISGWVFMISVGFNAAASVRVSNELGARNPKSASFSVVVVTLISFVIAVILALVVLALRDVISYVFTEGEVVAAAVSDLCPLLCLTLVLNGIQPVLSGVAVGCGWQAFVAYVNVGCYYIVGIPLGAVLGFYFNFGAKGIWLGMIGGTFMQTIILIWVTFRTDWNKEVEVAATSEKPESVNIGAVFTFDSVIGRVAKAAMEMAVSDVNSDPIVLNGTKLNLIMKDGRCNAFLGSTGAFQVLEQGVAAIIGPQSSAIAHSISQIADAVKVPLISYAATDPTLSSLQFPLFFRTVQSDSEQMAAMANLIDFNGWKEVIVVFLDDDYGRNGVSALSDELENRRLKISHKLALSIHFDLDEITKLLNQTKVFNPRVFVVHINPDPRLRIFSVAHKLQMMTSEYVWLVTDWLAATLYSFSPVNQKSLSIVEGVVGLRQHIPDSSKKRDFVSRWKKMQKRVANTSWNSYGFFAYDTVWAVAHSIDKFLKVHDNITFSLRDNNMVPHTEGIGIQLEKLKTFVNGSDFVNILSLSNFSGVSGQIRFSSDRNVISSGYDVININQMKINRVGYWSNHSGFSVVPPEILAKQKHPRVSVDQKLENITWPGGKTERPRGWVIADNAKPLRIGVPRRASFVEFVTELQDSHKIQGYCIDIFMKALEFIPYEIPFVFKPVGNGKSNPNYDSLVKKIDQNVYDAVVGDIAIVTNRTKIVDFSQPFASSSLVIVAPINSSKSNAWVFLRPFSADMWCIIGASFLMIGVVIWILEHRVNDEFRGPPKKQLVTMFMYAVFHNTVSSLSKMVLIVWLFLLMVITASYTASLTSILTVEQLSSPITGIDSLIASNWPIGYQVGSFAYSYLTDNLYVSKSRLVSLGSPEEYAVALRNGPSGGGVAAIVDELPYVELFLSKETEFGIIGQPFTRSSWGFAFQRDSPLALDMSTAILKLAESGELQKIHEKWFCKMGCPGERKSNPKPDQLHLSSFWGLYLSCAVISVVALILFLLRIISQYVGFKQRQKDIVAPSSEQSESHCSRVVVNFFNFIDKKEDAIKKMFTQCDNPHNPN 1373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04817 1373 Gene3D - 931 1047 - -
Tsu02g04817 1373 Gene3D - 1048 1170 - -
Tsu02g04817 1373 TIGRFAM matE: MATE efflux family protein 63 460 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Tsu02g04817 1373 CDD PBP1_GABAb_receptor_plant 500 894 IPR044440 -
Tsu02g04817 1373 Pfam MatE 63 223 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Tsu02g04817 1373 Pfam MatE 285 446 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Tsu02g04817 1373 SUPERFAMILY Periplasmic binding protein-like I 495 929 IPR028082 -
Tsu02g04817 1373 SMART GluR_14 938 1272 IPR001320 GO:0015276|GO:0016020
Tsu02g04817 1373 Pfam Receptor family ligand binding region 516 874 IPR001828 -
Tsu02g04817 1373 Gene3D - 517 865 - -
Tsu02g04817 1373 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 703 726 - -
Tsu02g04817 1373 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 572 600 - -
Tsu02g04817 1373 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 512 528 - -
Tsu02g04817 1373 Pfam Bacterial extracellular solute-binding proteins, family 3 953 1270 IPR001638 -
Tsu02g04817 1373 CDD GluR_Plant 935 1270 - -
Tsu02g04817 1373 Gene3D - 614 890 - -
Tsu02g04817 1373 CDD MATE_eukaryotic 53 488 IPR045069 GO:0042910|GO:1990961
Tsu02g04817 1373 Gene3D - 1219 1277 - -
Tsu02g04817 1373 SUPERFAMILY Periplasmic binding protein-like II 916 1270 - -
Tsu02g04817 1373 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 486 1371 - -
Tsu02g04817 1373 Pfam Ligand-gated ion channel 1271 1301 IPR001320 GO:0015276|GO:0016020
Tsu02g04817 1373 PANTHER GLUTAMATE RECEPTOR 3.7 486 1371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04817 Tsu-Chr2 57360867 57371811 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04817 489 1371 Ion Channels AT2G32400 54.302 0.0 1000
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04817 02 57360867 57371811 Tsu02g04817 02 57360867 57371811 ECH