Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04802 ATGGCTAGAATGATCTCCAACAACATAATCAACAAcgataacaataataacaatgttgAGGTTGACATTGACTCATCAAAAGATGATGTTGATGCAAAAACTGGCATGAAGAAGGGACCATGGACCCCACAAGAAGATATGATTTTGATAGAGTATGTGAACAAGCATGGTGAAGGTAATTGGAATTCTGTTCAAAAGAATTCAGGATTATTAAGGTGTGGAAAAAGCTGCAGACTTAGATGGGCCAATCATCTAAGGCCCAATCTCAAGAAAGGTTCATTttctgaagatgaagaaaaaatcatCATTGAACTTCATGCTAAGCTTGGAAACAAATGGGCTAGAATGGCTGCTCAGTTGCCAGGAAGAACGGACAATGAAATCAAAAACTTTTGGAACACGAGAATGAAAAGGCGTCAGAGAGCAGGATTACCTCTTTACCCTCCTGAAATCCAAGCAGAAGGAATTGCATACAATAATCATCTAGTGCAAGAATATCACCATACTTTAGATGAACCTTTCTCTTCTTCATCACCATCATTTTCTTTACTCTTATCTTCATGTTACCCTAAGAATCTTGATCATGATCAAAACAATCATGACTATAACCCTATGCAAAACAACTCTGATTCTTCTAATCATTACACCAATCCATGTCCACAATTCAACTTTTCCAATGATCATGAAAATTTAGAGATTAGTGAAACTCATGCTTTGCCAAATTCACCTTCACTTTCTCCTTatccatcttcatcatcaaatcTTTTCAACCAGAGTTTTGGTAATCCAAGTGATTCACATGATTACCAATATTCTGAAAATTTGAGCTATGGTCAACATGGATTCAATGCAAGGTCTCTGTATGATGCTGAAACTCCTGTTTCATCTTATGCTAGTGGTGTTGATGGTGTAATTGGAAATTCAAACATTGTTATGGAAGATCATGCACCACTTTCACCTGAAGGAAAAAATAGTGGACTTTTGGATGATCTTGTTATGGAAGGTAGAAATATTTCATGCAATGATAAGACTAGGAGTGAGGATTCAACATTTAAGGGGAATGAATCTTATAAGAGGAAAAGAATGGAGGGTGAAGAATATGATGAAGAAAGAGACATCATTCCTTTGATGAAGAAGAGGAGTGTTGATGAGACTCAGAAGAAAGATTTTAGCTCTTCTCAATTGCTAACAGGGAAGAAACCAATTGAAGAGGATCCATTAGCAGGGATGAATTCAGTGTATGATGATGACTTGGATTGCTTGCTCAACAATTTTCCCTCAGAAATACCAATGCCTGAATGGTATTGTAGAGGAAAAAACCAATCTTTGGGACTTGAAACTCAAATTGATCATGCTTCTCCACCATCTGGCCCTAACAATCAAGAATTTGCTTGGACTCTTGGATCAACTTGGAGCAACATGCCTGGAATATGTTAA 1437 0.3563 MARMISNNIINNDNNNNNVEVDIDSSKDDVDAKTGMKKGPWTPQEDMILIEYVNKHGEGNWNSVQKNSGLLRCGKSCRLRWANHLRPNLKKGSFSEDEEKIIIELHAKLGNKWARMAAQLPGRTDNEIKNFWNTRMKRRQRAGLPLYPPEIQAEGIAYNNHLVQEYHHTLDEPFSSSSPSFSLLLSSCYPKNLDHDQNNHDYNPMQNNSDSSNHYTNPCPQFNFSNDHENLEISETHALPNSPSLSPYPSSSSNLFNQSFGNPSDSHDYQYSENLSYGQHGFNARSLYDAETPVSSYASGVDGVIGNSNIVMEDHAPLSPEGKNSGLLDDLVMEGRNISCNDKTRSEDSTFKGNESYKRKRMEGEEYDEERDIIPLMKKRSVDETQKKDFSSSQLLTGKKPIEEDPLAGMNSVYDDDLDCLLNNFPSEIPMPEWYCRGKNQSLGLETQIDHASPPSGPNNQEFAWTLGSTWSNMPGIC 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04802 478 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 86 140 IPR017930 -
Tsu02g04802 478 CDD SANT 40 85 IPR001005 -
Tsu02g04802 478 Gene3D - 93 139 - -
Tsu02g04802 478 ProSiteProfiles Myb-like domain profile. 86 136 IPR001005 -
Tsu02g04802 478 SMART sant 37 87 IPR001005 -
Tsu02g04802 478 SMART sant 90 138 IPR001005 -
Tsu02g04802 478 CDD SANT 93 134 IPR001005 -
Tsu02g04802 478 SUPERFAMILY Homeodomain-like 35 132 IPR009057 -
Tsu02g04802 478 MobiDBLite consensus disorder prediction 1 38 - -
Tsu02g04802 478 ProSiteProfiles Myb-like domain profile. 33 85 IPR001005 -
Tsu02g04802 478 PANTHER TRANSCRIPTION FACTOR MYB28-LIKE 24 255 - -
Tsu02g04802 478 PANTHER TRANSCRIPTION FACTOR MYB28-LIKE 215 478 - -
Tsu02g04802 478 Pfam Myb-like DNA-binding domain 91 134 IPR001005 -
Tsu02g04802 478 Pfam Myb-like DNA-binding domain 38 85 IPR001005 -
Tsu02g04802 478 Gene3D - 37 90 - -
Tsu02g04802 478 MobiDBLite consensus disorder prediction 1 21 - -
Tsu02g04802 478 MobiDBLite consensus disorder prediction 195 272 - -
Tsu02g04802 478 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 37 85 IPR017930 -
Tsu02g04802 478 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 24 255 - -
Tsu02g04802 478 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 215 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04802 Tsu-Chr2 57221339 57224871 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04802 35 478 MYB Transcription Factor Family AT2G32460 38.310 3.43e-78 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu02g04802 Myb_DNA-binding 7.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04802 K09422 - gmx:100798860 457.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04802 02 57221339 57224871 Tsu02g04802 02 57221339 57224871 ECH