Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04796 ATGGAGTGGACCAGAGGCAACATCATCGGACATGGCTCTTCCGCCACCGTTTACCTCGCCACCTCTCGCAACTCCACCGATGTCTCCGCCGTGAAATCCGCGGAGACATCATTATCAAACTCAAAACAACTCCAGAGAGAACAGAGAATTCTTTCTTCTTTGTCCTCTCCTTACATAGTTAGCTATAAAGGTTGCAACATTACAAAGGAAAATAACAAGAAATTGTTCAATcttttcatggagtacatgcCCTTTGGAAACCTATCTCAGGCGACTCGCGGTGGCCGGCTCAACGAGGCGACGATAGCACACTACACAAGACAAATTTTGGAAGGACTAGAGTACTTGCATTCAAAAGGTGTTGTGCATTGTGATATCAAAGGTAGTAACATATTGGTTGGTGAAAAAGGAGTTAAAATTGGAGATTTTGGTTGTGCAAAGATGATCGATGAAATTGCGCCAATCGCCGGAACTCCATTGTATATGGCGCCGGAAGTGGCGCGCGGCGAAGAACAAGGGTACCCTTGTGATATTTGGTCACTTGGATGCACAATTGTTGAAATGGCAACTGGGTTTTCACCTTGGTCCAATGTAGATGACCCTGTTCATGTTCTGTTTCGTGTTGCATATTCTGATGAAGTTCCTATGATTCCTTGTTTTTTGTCTGAACAAGCTAAGGATTTCTTGGAAAAGTGTTTTATAAGAAATTCTAATCAGAGATGGAGTTGTATTCAATTGTTGAAACATCCATTTCTCTCTGAATTTGATTCTGGTGTTGAGAAAATTCAAGAATTTGATACATGTTCACCAACTAGTATTCTTGAACAGGATTTTTGGAATTGTGATGAAGATTCagaaagtttgttttttgatgatttgggtAAGACTAGTTTTGTGAATTGTCCTAATGGTAGGATAAAAAAGTTATCTTTATGTTCAAGGGATCATCCATGTTGGAAATGGGGTGATGAGAATTGGATCACAATTAGAGGGAATGATGCAGATGCAGATGCAGGAGGGGCTTCAATTAGTGGTGATGATTTAGATAAAAGTGATTTTAGTGGTAGAATTAGTGGTGATTATTTTTGTGAGGATTATAATAATTGTAAGATTAAGGATGTTAGTTTTTTAGTTAATAGTCTTAATTTTGAGAGAGGCATTGGAAGGTTGATGCATCATTCAACATtagattttttataa 1200 0.3742 MEWTRGNIIGHGSSATVYLATSRNSTDVSAVKSAETSLSNSKQLQREQRILSSLSSPYIVSYKGCNITKENNKKLFNLFMEYMPFGNLSQATRGGRLNEATIAHYTRQILEGLEYLHSKGVVHCDIKGSNILVGEKGVKIGDFGCAKMIDEIAPIAGTPLYMAPEVARGEEQGYPCDIWSLGCTIVEMATGFSPWSNVDDPVHVLFRVAYSDEVPMIPCFLSEQAKDFLEKCFIRNSNQRWSCIQLLKHPFLSEFDSGVEKIQEFDTCSPTSILEQDFWNCDEDSESLFFDDLGKTSFVNCPNGRIKKLSLCSRDHPCWKWGDENWITIRGNDADADAGGASISGDDLDKSDFSGRISGDYFCEDYNNCKIKDVSFLVNSLNFERGIGRLMHHSTLDFL 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04796 399 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 350 - -
Tsu02g04796 399 SMART serkin_6 3 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g04796 399 Gene3D Transferase(Phosphotransferase) domain 1 2 288 - -
Tsu02g04796 399 ProSiteProfiles Protein kinase domain profile. 3 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g04796 399 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
Tsu02g04796 399 Pfam Protein kinase domain 5 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g04796 399 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Tsu02g04796 399 PANTHER MAP KINASE KINASE KINASE 1 350 - -
Tsu02g04796 399 SUPERFAMILY Protein kinase-like (PK-like) 3 275 IPR011009 -
Tsu02g04796 399 CDD STKc_MAPKKK 2 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04796 Tsu-Chr2 57161938 57163148 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04796 1 280 MAP Kinase Kinase Kinase AT2G32510 53.793 1.49e-109 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Tsu02g04796 Pkinase 5.6e-58 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04796 K20716 - gmx:100797801 498.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04796 02 57161938 57163148 Tsu02g04796 02 57161938 57163148 ECH
Tsu02g04796 02 57161938 57163148 Tsu04g04818 04 55266306 55267368 ECH
Tsu02g04796 02 57161938 57163148 Tsu06g01247 06 11666670 11667845 PCT