Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04780 atgtcaatggATATGAATATGATGGGTAATGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACTACTCTAGCGGTTAGTGTTCCATGCAGTAGTTTGTTGACTATAGTGACAGTTAGATGTGGGCATTGTGCTAATTTGCTTTCAGTTAATATGGGAGCAGCATCACTTCAATCTTTTCCTCCTCAACAAGATCATCATCCTCAGTTTCAGAAACAGCAGCTTGTAAACTGTCATCAAGAAGGAAGTAGGAAGGAAGTTGTAggatcatcatcatcttcttcatcttcaaaatCCAAAGCTTTTCAGCATTTAGTCCATGAGCAACCTAGGACTCCTCCGATTCGTCCTCCCGAGAAGAGACAACGTGTTCCTTCTGCTTACAATCGGTTCATTAAGGAGGAAATACAAAGAATTAAGGCTGGTAATCCAGATATAAGTCACAGGGAAGCATTTAGCACAGCAGCTAAAAATTGGGCACATTTTCCTCATATTCACTTTGGATTAAAGTTGGATGCTAGCAAGCAAGCAAAATTGGACCATGGGGTTGGAGAGGCTACTCAAAAGTCTAATGGATTTTattga 588 0.3759 MSMDMNMMGNERVCYVHCNFCNTTLAVSVPCSSLLTIVTVRCGHCANLLSVNMGAASLQSFPPQQDHHPQFQKQQLVNCHQEGSRKEVVGSSSSSSSSKSKAFQHLVHEQPRTPPIRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSTAAKNWAHFPHIHFGLKLDASKQAKLDHGVGEATQKSNGFY 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04780 195 Pfam YABBY protein 10 170 IPR006780 GO:0007275
Tsu02g04780 195 Gene3D High mobility group box domain 107 180 IPR036910 -
Tsu02g04780 195 PANTHER AXIAL REGULATOR YABBY 2-RELATED 5 195 - -
Tsu02g04780 195 MobiDBLite consensus disorder prediction 83 104 - -
Tsu02g04780 195 MobiDBLite consensus disorder prediction 83 125 - -
Tsu02g04780 195 SUPERFAMILY HMG-box 110 163 IPR036910 -
Tsu02g04780 195 PANTHER PROTEIN YABBY 6-RELATED 5 195 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04780 Tsu-Chr2 56963685 56970968 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04780 1 195 C2C2-YABBY Transcription Factor Family AT1G08465 62.312 2.42e-76 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Tsu02g04780 YABBY 3.7e-73 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04780 K25796 - gmx:100785458 271.166
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04780 02 56963685 56970968 Tsu06g01266 06 11889695 11896979 PCT