Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04769 ATGGATGAAATTCATATTCCTTCTCATTTTCTTTGCCCAATTTCCCTCCAACTAATGAAAGATCCTGTTACTCTTTCCACAGGAATTAGCTACGACAGAGAAAACATAGAAAAATGGTTATTTTCATTCCAAAACAAAACTTGTCCTGTTACAAAATCACCTTTATCAGAAACCGATCTTAATAATCTTACACCAAATCACACTCTTCGTCGTTTGATTCAATCTTGGTGTACTCTTAATGCTTCATTTGGTGTTGAACGTATTCCAACACCAAAATCACCAatagacaaaacacaaattcTTAAACTCATCAATGAAACAAAGAAATTCCCAGAAAAACAACATAGTTGTCTTGTGAAGCTTCGTTCGATCGTCTTCGAAAGCGAAAGGAATAAAAAATGCTTGGAATCTGCAGGTGTAATAGAGTTTTTAGCTTCAACTATGAAGAACAATTTAAATTCAAGTTCTTTGAGTGAAGCTGCTATTGAAATTCTGTTTCATCTTAACCCTTCTGAAGTTCACATCAAGAGTTTGATAAACAATGAAAGAATTCAATTTATTGAATCATTGTTTCATGTTTTGAAGCTTGGAAGTTATCAATCTAGAGGTTATGCAACAATGCTATTGAAATCGGCGTATGAAGTATCCGATCCGATTCAATTAATAAGCGTAAAAAAATCGCTTTTCGAAGATTTAATGAGAGTACTAATTGATAAGATTTCTCAACAAGCTTCAAAAGCAGCATTGAAGTTAATTGTGGAGCTTTTACCGTGGGGGCGAAACCGAATTAAAGCGGTTGAAGGTGGCGCGGTTTTAGTCCTTATCGAACTTCTTTTCGATGTTTCGGAAAGAAGGGCGTGCGAATTGATTTTGACAGGTTTGGATCAACTCTGCGGTTGCGCCGAAGGGCGCGCCGAGTTGTTGAATCATGGTGCAGGTGTTGCTATTGTGTCAAAGAAAATTTTGAGGGTTTCTCATGTTGCAAGTGATAGAGGAGTTAGAATTTTGAGCTCAATTTGTAGATATTCAGCAAATTCAAGAGTTTTGCATGAAATGTTGCAAGTTGGAGCTGTTTCAAAGTTGTGTTTGGTTCTTCAAGTTGATAGTAATTTTAAGACTAAAGAAAAAGCTAAGGAGATTCTCAAATTGCATTCTTCTATTTGGAAAAATTCTACATGTATTCCTGTTCCTTTGTTATCTTCTTATCCATGA 1212 0.3515 MDEIHIPSHFLCPISLQLMKDPVTLSTGISYDRENIEKWLFSFQNKTCPVTKSPLSETDLNNLTPNHTLRRLIQSWCTLNASFGVERIPTPKSPIDKTQILKLINETKKFPEKQHSCLVKLRSIVFESERNKKCLESAGVIEFLASTMKNNLNSSSLSEAAIEILFHLNPSEVHIKSLINNERIQFIESLFHVLKLGSYQSRGYATMLLKSAYEVSDPIQLISVKKSLFEDLMRVLIDKISQQASKAALKLIVELLPWGRNRIKAVEGGAVLVLIELLFDVSERRACELILTGLDQLCGCAEGRAELLNHGAGVAIVSKKILRVSHVASDRGVRILSSICRYSANSRVLHEMLQVGAVSKLCLVLQVDSNFKTKEKAKEILKLHSSIWKNSTCIPVPLLSSYP 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04769 403 Gene3D - 98 390 IPR011989 -
Tsu02g04769 403 Pfam U-box domain 6 78 IPR003613 GO:0004842|GO:0016567
Tsu02g04769 403 PANTHER OS11G0573500 PROTEIN 1 403 - -
Tsu02g04769 403 CDD RING-Ubox_PUB 10 52 IPR045210 -
Tsu02g04769 403 PANTHER WDSAM1 PROTEIN 1 403 IPR045185 GO:0061630
Tsu02g04769 403 SMART Ubox_2 9 76 IPR003613 GO:0004842|GO:0016567
Tsu02g04769 403 SUPERFAMILY ARM repeat 101 382 IPR016024 -
Tsu02g04769 403 ProSiteProfiles U-box domain profile. 5 83 IPR003613 GO:0004842|GO:0016567
Tsu02g04769 403 SUPERFAMILY RING/U-box 4 80 - -
Tsu02g04769 403 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 84 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04769 Tsu-Chr2 56841618 56842829 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04769 2 403 U-box Gene Family AT2G35930 55.172 7.14e-160 454
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04769 - - gmx:100778012 629.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04769 02 56841618 56842829 Tsu02g04769 02 56841618 56842829 ECH