Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04716 ATGAAAATTTGCATGCTTGGTGATGCTCAACATGTTGAGGAGGCTGAGAAAATAGGACTGGACTGGATGGATGTTGAAGCTTTGAAGAAgctaaacaaaaataagaaactAGTGAAGAAATTGGCAAAGAAGTACCATGCCTTTTTAGCTTCTGAAGCTGTAATCAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAGGCAGGAAAGTTCCCTACACTTGTTTCCCACCAAGAATCTCTTGAGGCTAAGGTTAATGAGACCAAGGCTATGGTCAAATTCCAGCTTAAGAAAGTGTTGTGCATGGGAGTAGCTGTTGGCAATGTCAGTATGGATGAAAAACAAATCTTCCAGAATGTGCAACTGAGTGTTAACTTCCTCGTGTCCTTGTTGAAAAAGAACTGGCAAAACGTTAGGTGCTTGTATCTGAAGAGTTCTATGGGCAAATCACACCGTGTCTTTTAA 468 0.4017 MKICMLGDAQHVEEAEKIGLDWMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGLNKAGKFPTLVSHQESLEAKVNETKAMVKFQLKKVLCMGVAVGNVSMDEKQIFQNVQLSVNFLVSLLKKNWQNVRCLYLKSSMGKSHRVF 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04716 155 CDD Ribosomal_L1 1 154 IPR028364 -
Tsu02g04716 155 PANTHER 60S RIBOSOMAL PROTEIN L10A-3 1 154 - -
Tsu02g04716 155 Gene3D - 1 93 IPR016095 -
Tsu02g04716 155 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 1 154 - -
Tsu02g04716 155 ProSitePatterns Ribosomal protein L1 signature. 55 74 IPR023673 -
Tsu02g04716 155 Pfam Ribosomal protein L1p/L10e family 1 149 IPR028364 -
Tsu02g04716 155 SUPERFAMILY Ribosomal protein L1 1 155 IPR023674 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04716 Tsu-Chr2 56317805 56319058 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04716 1 155 Cytoplasmic Ribosomal Protein Gene Family AT1G08360 90.323 8.70e-89 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04716 K02865 - gmx:100808580 276.944
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04716 02 56317805 56319058 Tsu02g04716 02 56317805 56319058 ECH