Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04713 ATGTATCATCATCACCAACAACATCAAGGAAAAAATATCCATTCTTCTTCTAGAATGTCAATACCATCTGAGAGACACATGTTCCTTCAAACAGGAAATGGTTCTAGTGATTCAGGACTCGTACTCTCGACCGATGCTAAACCTCGATTAAAATGGACACCTGATCTTCATGCAAGGTTTATAGAAGCAGTTAATCAGTTAGGTGGAGCTGACAAGGCTACTCCTAAAACAGTAATGAAACTCATGGGGATTCCAGGGCTTACCTTATATCATCTAAAGAGTCATCTTCAGAAATATAGATTGAGCAAGAATCTGCATGGACAAAGCAACAGTAATGTGACACACAAATTAAATACACATTCAGCTTCAGCAACTGATGAGAGACTTTCTGATCAAACCAATGGAACTCACATCAATAAATTAACTCTTGGACCACAACCTAATACTAACAACAAAGATATACACATAAGCGAGGCGCTGCAGATGCAGATTGAGGTTCAGAGAAGACTTAATGAACAACTTGAGGTACAAAGACACTTGCAATTAAGGATAGAAGCTCAAGGAAAATACCTTCAATCGGTACTCGAAAAAGCTCAAGAAACACTTGGTAGACAGAATTTAGGAATAGTAGGACTTGAAGCTGCTAAAGTTCAACTCTCAGAGCTTGTGTCAAAAGTATCATCACAGTGTCTGAATTCAACATTTTCAGAGATGAAAGAGTTACAAGGCTTTTGTCCTCAACCAAACGACGGCTCCATGGATAGTAGTTGTTTAACATCGTGCGACCGATCACAAAAAGAACAAGAGATTATTCAAAATGGAGGATTTGGATTAAGACACTTCAACAACAATAATCATGTGTTCATGGAAAGAAAAGAACAACAAACAACAGAATTAACAGGTTCTGTTCAAAACCTTAGAAATAATGAAGTACTAAAATGGTGTGTTGATGAAGTAAAAAAGAACAGTACTAATTTTCTCACCCCTTTAGGAAAAAACAATGAATTAGAAAGAAATCATGGGAATTTGTCTATGAACATTGGAGTTGAACAAAATCACTCAGATATTGGTGAGTTTCAACACAGAAACAATACAAGAACAGAAACAATGAAATCAGTGGATGATAATAATAAGATGCAACAATCTTCTAATTACTTTTCAGCTTCAAGATTGGATTTAAACAGTGGTGGAGATCATAATGAAGGTGCTACAAATTGTAAACAGCTTGATTTGAATAGGTTCAGTTGGAACTGA 1254 0.3612 MYHHHQQHQGKNIHSSSRMSIPSERHMFLQTGNGSSDSGLVLSTDAKPRLKWTPDLHARFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQSNSNVTHKLNTHSASATDERLSDQTNGTHINKLTLGPQPNTNNKDIHISEALQMQIEVQRRLNEQLEVQRHLQLRIEAQGKYLQSVLEKAQETLGRQNLGIVGLEAAKVQLSELVSKVSSQCLNSTFSEMKELQGFCPQPNDGSMDSSCLTSCDRSQKEQEIIQNGGFGLRHFNNNNHVFMERKEQQTTELTGSVQNLRNNEVLKWCVDEVKKNSTNFLTPLGKNNELERNHGNLSMNIGVEQNHSDIGEFQHRNNTRTETMKSVDDNNKMQQSSNYFSASRLDLNSGGDHNEGATNCKQLDLNRFSWN 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04713 417 Pfam MYB-CC type transfactor, LHEQLE motif 154 201 IPR025756 -
Tsu02g04713 417 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 5 417 IPR044848 GO:0003700
Tsu02g04713 417 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 44 104 IPR017930 -
Tsu02g04713 417 Coils Coil 289 309 - -
Tsu02g04713 417 Gene3D - 46 104 - -
Tsu02g04713 417 Coils Coil 157 177 - -
Tsu02g04713 417 Pfam Myb-like DNA-binding domain 49 100 IPR001005 -
Tsu02g04713 417 PANTHER MYB-RELATED PROTEIN 2 5 417 - -
Tsu02g04713 417 SUPERFAMILY Homeodomain-like 46 102 IPR009057 -
Tsu02g04713 417 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 47 102 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04713 Tsu-Chr2 56298666 56300882 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04713 79 417 G2-like Transcription Factor Family AT3G04030 48.725 3.03e-83 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Tsu02g04713 Myb_DNA-binding 3.6e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04713 - - gmx:100810396 554.673