Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04706 ATGGGTTTGAGGGATAAGTGCAATGTAGAAGACAAGAATTTAtatcttcaaaccccaaatttcattgaatggctcaaaccatcatcatcactcTCATCCTCTCCTTCATCATCTTTAACTCATCGACAAGAAATATCTCAAGAAACTTTTCAGTTTTTACCAATCTATAGTGGAATTAAGTCCTTTGAGGAAAACCATGGGATGCAAAAGGAAGATTTAGAAGTAAAAGAAGAGAAAGTGGAACATGTGACTGTGGCTTTGCACATTGGATTGCCTAACATAGGAGGAAGTGAATCTGATGATCATGATGAGAAGAATAAGGTTTTTGATGAGAAGAATAAAGTTAATAAGGAAgaagaattaaagaaaaacttgcatggtttttgttttaaggaagaaagaaggttttggATACCAACTCCTGCTCAGATCCTTGTTGGACCTATGCAATTTGCTTGTTCCATATGCAACAAGACTTTCAATAGATACAACAATATGCAGATGCATATGTGGGGACATGGATCTGAATTCCGGAAAGGACCGGACTCACTTAAAGGAACACAACCAGCAGCAATGTTAAGACTACCATGTTATTGTTGTGCTAATGGTTGCAAGAACAACATCAATCATCCAAGAGCAAAACCATTGAAAGATTTTAGAACTCTCCAAACTCATTACAAAAGAAAGCATGGAACAAAACCATTTATTTGCAGAAAATGTTCTAAAGCATTTGCTGTTAAAGGTGATTGGAGAACTCATGAGAAAAATTGTGGAAAGTTTTGGTATTGCACTTGTGGTTCTGATTTTAAACACAAAAGATCTCTTAAAGATCATGTTAGATCCTTCGGAAAAGGTCATTCCCCGAATCCTTCTCTTGAAGGGTTCGAAGACGGGAATGAATGCAGCAATACCGGATCCGATGATGATGAAGTTGCTCATGCATga 945 0.3302 MGLRDKCNVEDKNLYLQTPNFIEWLKPSSSLSSSPSSSLTHRQEISQETFQFLPIYSGIKSFEENHGMQKEDLEVKEEKVEHVTVALHIGLPNIGGSESDDHDEKNKVFDEKNKVNKEEELKKNLHGFCFKEERRFWIPTPAQILVGPMQFACSICNKTFNRYNNMQMHMWGHGSEFRKGPDSLKGTQPAAMLRLPCYCCANGCKNNINHPRAKPLKDFRTLQTHYKRKHGTKPFICRKCSKAFAVKGDWRTHEKNCGKFWYCTCGSDFKHKRSLKDHVRSFGKGHSPNPSLEGFEDGNECSNTGSDDDEVAHA 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04706 314 Gene3D Classic Zinc Finger 233 282 - -
Tsu02g04706 314 ProSiteProfiles Zinc finger C2H2 type domain profile. 151 178 IPR013087 -
Tsu02g04706 314 MobiDBLite consensus disorder prediction 280 314 - -
Tsu02g04706 314 Pfam C2H2-type zinc finger 151 170 - -
Tsu02g04706 314 PANTHER ZINC FINGER PROTEIN WIP3-LIKE 1 42 - -
Tsu02g04706 314 PANTHER ZINC FINGER PROTEIN WIP3-LIKE 41 310 - -
Tsu02g04706 314 PANTHER ZINC FINGER PROTEIN WIP2 1 42 IPR043584 GO:0003700|GO:0010468
Tsu02g04706 314 PANTHER ZINC FINGER PROTEIN WIP2 41 310 IPR043584 GO:0003700|GO:0010468
Tsu02g04706 314 SUPERFAMILY beta-beta-alpha zinc fingers 130 174 IPR036236 -
Tsu02g04706 314 Gene3D Classic Zinc Finger 150 173 - -
Tsu02g04706 314 SUPERFAMILY beta-beta-alpha zinc fingers 221 255 IPR036236 -
Tsu02g04706 314 SMART c2h2final6 151 173 IPR013087 -
Tsu02g04706 314 SMART c2h2final6 235 255 IPR013087 -
Tsu02g04706 314 ProSitePatterns Zinc finger C2H2 type domain signature. 153 173 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04706 Tsu-Chr2 56195609 56199087 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04706 8 304 C2H2 Transcription Factor Family AT1G08290 56.268 1.23e-120 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu02g04706 zf-C2H2_6 0.0001 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04706 - - gmx:100819306 468.388
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04706 02 56195609 56199087 Tsu02g04706 02 56195609 56199087 ECH
Tsu02g04706 02 56195609 56199087 Tsu06g01357 06 12763694 12766853 PCT