Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04704 ATGTACAGCAATTTCAAGGAACAAGCGATAGAGTACGTGAAACAAGCGGTTCATGAAGACAATGCTGGTAACTATGCAAAAGCGTTTCCTTTATATATGAACGCTTTGGAGTATTTCAAAACTCATTTGAAGTATGAAAAGAACCCTAAAATTAGAGAAGCTATTACGCAACGATTCACCGAGTATTTACGTCGTGCTGAAGAGATCAGGGCTGTACTTGATGATGGTGGACCTGGTCCAGCTTCTAATGGTGATGCTGCTGTTGCTACAAGGCCAAAGAGTAAGCCTAAGGAtggtagtggtggtggtggtggtgaaggTGGAGGTGATGGGGAGGATCCTGAGCAAGCGAAGCTTAGGGCCGGGTTGAATTCGGCGATTATTAGAGAAAAACCTAATGTTAAGTGGAATGATGTTGCTGGGTTGGAAAGTGCTAAACAAGCTTTGCAAGAAGCTGTTATTTTGCCTGTGAAGTTTCCTCAGTTTTTTACTGGTAAAAGACGACCATGGAGAGCATTTTTGTTATATGGACCTCCTGGAACTGGGAAATCATATTTAGCTAAGGCAGTTGCAACTGAGGCTGATTCCACATTTTTCAGTATTTCTTCATCAGATCTCGTTTCAAAGTGGATGGGTGAAAGTGAAAAACTGGTTTCAAATCTTTTCCAAATGGCCCGAGAAAATGCCCCCTCTATCATATTTATTGATGAAATAGATTCCCTATGTGGCCAGCGTGGAGAAGGAAATGAGAGTGAAGCTTCAAGACGAATCAAAACAGAACTTTTGGTCCAGATGCAGGGTGTAGGAAACAATGACCAGAAAGTTCTTGTTCTTGCAGCAACAAATACACCTTATGCTTTAGACCAgGCAATTAGGCGTCGTTTTGATAAGCGTATATATATTCCACTACCAGATTTGAAGGCTCGCCAACACATGTTCAAGGCAAGGGAAATATGCATGATTATCAAATGCTAA 975 0.4 MYSNFKEQAIEYVKQAVHEDNAGNYAKAFPLYMNALEYFKTHLKYEKNPKIREAITQRFTEYLRRAEEIRAVLDDGGPGPASNGDAAVATRPKSKPKDGSGGGGGEGGGDGEDPEQAKLRAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSNLFQMARENAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGNNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKAREICMIIKC 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04704 324 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 128 316 IPR027417 -
Tsu02g04704 324 Gene3D - 132 304 IPR027417 -
Tsu02g04704 324 PANTHER AAA DOMAIN-CONTAINING 1 315 - -
Tsu02g04704 324 SMART smart 2 79 IPR007330 -
Tsu02g04704 324 SMART AAA_5 169 305 IPR003593 -
Tsu02g04704 324 Pfam MIT (microtubule interacting and transport) domain 7 70 IPR007330 -
Tsu02g04704 324 Gene3D - 6 75 - -
Tsu02g04704 324 PANTHER AAA-TYPE ATPASE FAMILY PROTEIN 1 315 - -
Tsu02g04704 324 Pfam ATPase family associated with various cellular activities (AAA) 174 303 IPR003959 GO:0005524|GO:0016887
Tsu02g04704 324 CDD AAA 140 303 - -
Tsu02g04704 324 Gene3D - 305 315 - -
Tsu02g04704 324 SUPERFAMILY MIT domain 2 82 IPR036181 -
Tsu02g04704 324 ProSitePatterns AAA-protein family signature. 275 294 IPR003960 GO:0005524|GO:0016887
Tsu02g04704 324 CDD MIT_VPS4 4 77 IPR045253 -
Tsu02g04704 324 MobiDBLite consensus disorder prediction 73 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04704 Tsu-Chr2 56168335 56172627 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04704 112 320 Calmodulin-binding Proteins AT3G56690 41.778 7.86e-41 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04704 K12196 - gmx:100788150 591.652
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04704 02 56168335 56172627 Tsu02g04704 02 56168335 56172627 ECH
Tsu02g04704 02 56168335 56172627 Tsu06g01371 06 12854020 12865670 PCT