Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04688 ATGGCGGAGGAGCACGAAAATGGCGCGAATGTAAGCGAAGATGAACCCTTAGTTGGACCCGGTCCAGCTCCTCGTGCTCGACCCAAACGACCTCTTCAATTCGAACAAGCTTATCTCGATGCTTTACCTTCCGCTAATATGTACGAGAAAAGCTATATGCATCGTGATGTCGTTACTCATGTTGCTGTTTCGGCTGCAGAGTTTTTCATTACTGGAAGTGCAGATGGGCATTTGAAGTTTTGGAAGAAAAGGCCTATTGGTATTGAGTTTGCAAAACACTTCAGATCTCATCTTGGTCCTATTGAAGGTCTAGCTGTTAGTATTGATGGTCTGCTTTGCTGTACAATATCAAATGACCGCTCTGTAAAAGTATATGATGTAGTCAACTTTGATATGATGGTGATGATTCGATTGCCATACATTCCTGGTGCTATTGAATGGGTTTATAATCAAGGGGATGTCAAAGCTAGGCTTGCTATTAGCGATAGGAACTCATCTTTTGTTCACATATATGATGCACGATCTGGTTCAAATGATCCCATCATCTCCAAAGAGATTCATATGGGTCCTATTAAAGTTATGAAGTTCAACCCTGTGTATGATACTGTAATTTCGGCAGATACAAAGGGTATCATTGAATACTGGAACCCAACAACACTCCAGTTCCCGGAGGATGAGGTGAGTTTTAAGGTTAGAAGTGATACTAACCTCTTTGAAATAGTAAAATGCAAGACTTCTGTTTCGTCTATTGAGGTCAGTCCAGATGGTAAACAATTTTCCATTACATCACCTGACCGTAGGATACGCGTGTTTTGGTTCAGAACGGGTAAACTGAGACGTGTTTATGATGAATCCTTGGAGGTTGCTCAAGATCTCCAAAGAAGTGACGCTCCATTATATCGATTGGAAGCCATTGATTTCGGTCGAAGAATGGCTGTTgagaaagaaatagagaagACAGAAAGTGCACCACAACCAAATGCAGTTTTTGATGATAGTTCCAACTTTCTTATATATGCAACCTTGCTTGGGATTAAAGTTGTTAATTTGCACACCAATAAAGTTGCTCGGATACTTGGAAAGGTGGAGAATAATGATAGGTTCTTAAGAATAGCTTTATATCATGGTGAACGAAGCAGCAAAAAAGTAAGAAAGATTCCTTCGGTAGCTGCGAATGCTAATGAGAGCAAAGAGCCTTTGACAGATCCCACTCTCCTATGTTGTGCTTTCAAAAAGCACAGGATATATTTATTCAGTCGAAGAGAGCCTGAGGAGCCTGAAGATGCAACTAAGGGAAGAGATGTGTTCAATGAAAAACCTCCCGCTGATGAACTTTTGGCAGTTTCAGATATTGGAAAGGCACTTACAACATCACTTCCTGACAATGTGATTATGCACACCACTATGGGTGATATTCACATGAAGTTATACCCAGAAGAGTGTCCAAAATCTGTGGAAAACTTTACAACTCACTGCAAAAACGGCTATTATGACAATCTTATTTTTCACAGGGTCATCAAAGGCTTCATGATACAAACAGGAGATCCTTTAGGAGACGGAACTGGTGGGCAATCCATTTGGGGAAGAGAATTTGAAGATGAATTTCACAAAAGTTTAAGGCATGATAGGCCTTTCACATTGTCAATGGCAAACGCGGGGCCAAATACCAACGGTTCTCAGTTTTTTATCACCACAGTGGCTACTCCATGGCTGGACAACAAGCACACTGTATTTGGTAGAGTTGTGAAGGGAATGGATGTTGTCCAGGCTATAGAAAAAGTGAAGACAGACAAGACAGATAAGCCATATCAAgatgttaaaattttaaatgtcaCTGTACCAAAGTCTTGA 1851 0.4014 MAEEHENGANVSEDEPLVGPGPAPRARPKRPLQFEQAYLDALPSANMYEKSYMHRDVVTHVAVSAAEFFITGSADGHLKFWKKRPIGIEFAKHFRSHLGPIEGLAVSIDGLLCCTISNDRSVKVYDVVNFDMMVMIRLPYIPGAIEWVYNQGDVKARLAISDRNSSFVHIYDARSGSNDPIISKEIHMGPIKVMKFNPVYDTVISADTKGIIEYWNPTTLQFPEDEVSFKVRSDTNLFEIVKCKTSVSSIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTESAPQPNAVFDDSSNFLIYATLLGIKVVNLHTNKVARILGKVENNDRFLRIALYHGERSSKKVRKIPSVAANANESKEPLTDPTLLCCAFKKHRIYLFSRREPEEPEDATKGRDVFNEKPPADELLAVSDIGKALTTSLPDNVIMHTTMGDIHMKLYPEECPKSVENFTTHCKNGYYDNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFHKSLRHDRPFTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQAIEKVKTDKTDKPYQDVKILNVTVPKS 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04688 616 Gene3D - 452 616 IPR029000 -
Tsu02g04688 616 SUPERFAMILY WD40 repeat-like 56 279 IPR036322 GO:0005515
Tsu02g04688 616 CDD cyclophilin_WD40 464 611 - -
Tsu02g04688 616 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 497 514 IPR020892 GO:0003755|GO:0006457
Tsu02g04688 616 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 560 572 IPR002130 GO:0000413|GO:0003755
Tsu02g04688 616 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 545 560 IPR002130 GO:0000413|GO:0003755
Tsu02g04688 616 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 573 588 IPR002130 GO:0000413|GO:0003755
Tsu02g04688 616 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 476 491 IPR002130 GO:0000413|GO:0003755
Tsu02g04688 616 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 502 514 IPR002130 GO:0000413|GO:0003755
Tsu02g04688 616 ProSiteProfiles Trp-Asp (WD) repeats profile. 51 82 IPR001680 GO:0005515
Tsu02g04688 616 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 463 613 IPR002130 GO:0000413|GO:0003755
Tsu02g04688 616 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 459 613 IPR002130 GO:0000413|GO:0003755
Tsu02g04688 616 Pfam WD domain, G-beta repeat 58 82 IPR001680 GO:0005515
Tsu02g04688 616 Pfam WD domain, G-beta repeat 92 126 IPR001680 GO:0005515
Tsu02g04688 616 Gene3D - 41 436 IPR015943 GO:0005515
Tsu02g04688 616 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 5 614 IPR044666 -
Tsu02g04688 616 PANTHER PEPTIDYLPROLYL ISOMERASE DOMAIN AND WD REPEAT-CONTAINING PROTEIN 1 5 614 - -
Tsu02g04688 616 SUPERFAMILY Cyclophilin-like 460 613 IPR029000 -
Tsu02g04688 616 SMART WD40_4 45 82 IPR001680 GO:0005515
Tsu02g04688 616 SMART WD40_4 177 216 IPR001680 GO:0005515
Tsu02g04688 616 SMART WD40_4 87 126 IPR001680 GO:0005515
Tsu02g04688 616 SMART WD40_4 233 272 IPR001680 GO:0005515
Tsu02g04688 616 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04688 Tsu-Chr2 55933105 55941573 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04688 463 613 U-box Gene Family AT5G67530 47.020 1.18e-41 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04688 K12736 - gmx:100792207 1172.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04688 02 55933105 55941573 Tsu02g04688 02 55933105 55941573 ECH