Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04673 ATGGAGTTTTGGGgTGCTGAAGTTAAGGTTGGTGAAACCCTTAAGGTTGATCCAATGGAATTTGAGGCTTGCATTCATCTTTCACAGGTTGCATTAGGTGAATCAAAGAAAGACAAAGGAAATGAGTCTGTGGTTCTTTTTGTGAAAGTTGGTGAACAGAAGATAGTTTTGGGAACCCTTGTTAAGGACAAAATCCCTCAGATATCTCTTGATTTGGTTTTGGACAAGGAGTTTGAGCTTTCTCATAATTCCAAAACTGCTAGTGTCCATTTCTGTGGATACAAATCTCTTTACCCTGAAGATAGTGAAGATGATTTTTCTGATAGTGATGAGGAGGAGATCCCATTGGCAATTCCAGAGAATGGTAAACCAGAAACAAAAGCAGAGGACTTGAAGGTTGCTGAACCTAAAAAAGCTAATGCCAAGGCTCCTCAACATGCCAAGAATGCTGCACCTGCCAAGCCTGCTAAACAAGTAAAGGTTGTTGATCCAAAGGAAGAGTCTGACGATGAatctgatgaagatgatgatgaacttgGAAGCTCCGATGATGAGATGGAGGATGCTGACAGTGATGAAGAAGATGGGGATGACAGTGATGAAGAGGATGAGGAAGAGACTCCTGTGAAAAAGgtGGAGCAGGGAAAGAAGAGGGCCAATGAATCTGCTTCTAAAACTCCAGTTCCTTCCAAGAAAGCAAAAAATGCCACTCCTGAAAAGACTGATGGTAAGAAAGCTGGACATACTTCAACTCCTCACCCTAAGAAGGGAGCAAAGACTCCCAACACAGATGCCAAAAGCCCCAAGTCTGGAGGACAACTATCCTGTGGAAGTTGCAGCAAGACATTCAACTCTGAAACAGGATTGCAACAACACAGCAAAGCCAAGCATGGtgctcagtga 903 0.4131 MEFWGAEVKVGETLKVDPMEFEACIHLSQVALGESKKDKGNESVVLFVKVGEQKIVLGTLVKDKIPQISLDLVLDKEFELSHNSKTASVHFCGYKSLYPEDSEDDFSDSDEEEIPLAIPENGKPETKAEDLKVAEPKKANAKAPQHAKNAAPAKPAKQVKVVDPKEESDDESDEDDDELGSSDDEMEDADSDEEDGDDSDEEDEEETPVKKVEQGKKRANESASKTPVPSKKAKNATPEKTDGKKAGHTSTPHPKKGAKTPNTDAKSPKSGGQLSCGSCSKTFNSETGLQQHSKAKHGAQ 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04673 300 ProSitePatterns Zinc finger C2H2 type domain signature. 276 297 IPR013087 -
Tsu02g04673 300 MobiDBLite consensus disorder prediction 123 142 - -
Tsu02g04673 300 MobiDBLite consensus disorder prediction 263 294 - -
Tsu02g04673 300 MobiDBLite consensus disorder prediction 167 207 - -
Tsu02g04673 300 MobiDBLite consensus disorder prediction 101 300 - -
Tsu02g04673 300 Pfam Nucleoplasmin-like domain 3 94 IPR041232 -
Tsu02g04673 300 PANTHER 32 KDA HEAT SHOCK PROTEIN-RELATED 1 296 - -
Tsu02g04673 300 PANTHER HISTONE DEACETYLASE HDT3-LIKE ISOFORM X1 1 296 - -
Tsu02g04673 300 ProSiteProfiles Zinc finger C2H2 type domain profile. 274 300 IPR013087 -
Tsu02g04673 300 Gene3D Nucleoplasmin core domain 1 99 - -
Tsu02g04673 300 MobiDBLite consensus disorder prediction 235 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04673 Tsu-Chr2 55748887 55751981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04673 1 299 C2H2 Transcription Factor Family AT5G03740 37.651 2.94e-43 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu02g04673 NPL 1.6e-13 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04673 - - gmx:100795506 333.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04673 02 55748887 55751981 Tsu02g03722 02 42093623 42098001 PCT