Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04665 ATGGGGAGCAAGGTCACCGATCCCAATCTCTCCACCGTCCGATCCATCGTCGGTTCCGAATTCTCCGATATGGACATCATCAGAGCTCTACACATGGCCAAAAACGACGTCACTGCCGCCATTAACATCATCTTTGATACCAATACTCCTAAATTCAAACCCACTCGCACAATCAATAAACAACGAGTTTCTCCTCCGAAATCATCTCCACGCGCCGTCACTGCTAGCTCCAAGAAAAGCAACGCCGATGTAGAAAATAAGAAATGTTCGGTTGTGTCTGAGTCGGATTCAGAATTGGTTGATTGGTGGTTCGTTGGTTCCGGTGAAGTGGCGGGGTTGTCGACGTGTAAAGGAAGGAGTTTAAAGTCTGGTGATAAAgtgattttcaaatttccaaCTAAAAAGGTTTCTGTTTCGCCGTCTCCGGGTAAGGGTTTTGGTCGAGCAGCGAGTTGTTCGGAGATAGTTCGATTTTCGAATGAACAAGATTGGGAGATTGGCAGAATACCGAATGAATGGGCTCGATGTTTGTTGCCGCTGGTGCGAGATAATAAGGTTAGGGTTGATGGGAAATGTGAATTTGCTCCTAATGTTTTGGGCATTATGGATACTATCAATTTGTCGATCAGTGTTTTCATCAATAGGTCAATGTTTGTTAAGCATCATCATGTTTCTCTTAAGGATGCTACAAGTTCGACAGATGAATCTGTGTTTCATCCTCTTCCAGCCCTGTTTCGATTGCTTGGCCTGAGCCCTTTCAAGAAGGCAGAGTTGACTCCTGGTGATTTCTATACCAACAAGCGTCCTTTCAGTCAAACGGTCACATCACTACATACTAAGTCCGAGCATCCTTCTCAAAATGGTCATGAGAATGAAAATGAGGACCCTGTTTCCGAATTTGATCTTGATAACATTGTTGGTGTTGCATCAAGCTCAGAGTTAGAGGAAATGGACCCCCCTGAAAATCTTCTCTGTGAACTGCGACCCTATCAAAAACAGGCTCTTCATTGGATGATTCAGATGGAGAAGGGACGGTCAAGGGACGAGACTACAACAACCCTTCATCCATGTTGGGAGGCATATCGCCTGGCTGACAAGAGGGAGCTTGTTGTTTATTTGAATGCATTTTCTGGTGAAGCCACAACGGAATTTCCTAGCACCCTACAAATGGCCAGAGGAGGAattttGGCAGATGCTATGGGGCTTGGAAAGACTGTAATGACCATATCCCTTCTCATTGCCCATTCAGGAAGGGGTGGATCATTAGGCAGTCAACCCATAGCTCAGTCATTTATTGAAGATGTTGAAGTTGGTGATACTGGTACAGTTcccaaattttcaaacattccAAAGAAGGCAACCAAATTTACTGGTTTTGATAAACTGACAAAGCAAAACACTTCTTTATCAAGTGGTGGCAACTTGATAATATGTCCCATGACTCTTCTTGGGCAGTGGAAGgCAGAGATTGAAACTCATGTGCACCCTGGGTCTCTGTCTCTATATGTTCATTACGGACAAAGTAGGCCCAAAGATGCAAAGAGTCTAGCTCAATGCAATGTTGTAATTACTACCTACGGAATTTTGGCCTCTGAATTTTCCAGTGAGAATGCAGAGAATAATGGTGGGCTCTTCTCCATTCGTTGGTTCAGAGTGGTTCTTGACGAGGCACATACTATAAAATCTTCTAAAAGCCAAGTTTCTATGGCAGCTTCTGCTCTAATTGCTGACAATCGCTGGTGTCTTACTGGGACTCCAATCCAGAACAACCTTGAGGATGTTTACAGTCTTCTTCGCTTTCTGAGGATAGAGCCTTGGGGTCATTGGGCCTGGTGGAACAAGCTTATTCAGAAACCATTTGAGGGTGGTGATGAGAGAGGATTGAAATTAGTTCAGTCCATTTTGAAGCCTATCATGTTGAGGAGAACCAAACATAGCACAGATCGAGAGGGAAAGCCTATACTAGTTCTCCCTCCCGCGGATATGCAGATAATTTATTGTGATCCCACAGAAGCTGAAAAGGACTTCTATGAGGCCCTATTCAAAAGATCTaagGTAAAGTTTGATAAGTTTGTTGAGCAAGGACGTGTTCTTCATAATTATGCTTCAATACTAGAGCTACTTTTACGTCTTCGGCAGTGTTGTGACCATCCGTTTCTCGTCATGAGTCGAGGTGATACTCAAGAATTTTCCGACCTAAGCAAACTAGCTAAGCGCTTCCTTAGAGGAACTGGTAATGCTTCAGAAGGTGAAGTAAAAGATGCAGTCTCACGAGCTTATGTTGAAGAAGTTGTGGAAGAGTTACGTAAAGGGGAGCAGGGAGAGTGTCCAATATGTCTTGAAGCATTTGAAGATGCAGTGTTGACACCATGTGCTCACCGACTTTGCCGGGAATGCCTGTTGGCAAGTTGGCGAAATTCTAGCTCTGGCTTATGTCCTGTTTGTAGGAAAACAATAAGCAAGCAGGACCTTATCACTGCCCCTACTGAGAGTCGATTTCAGGTTGACATCGAGAAGAACTGGGTAGAGTCATGCAAGATAACTGGTCTTTTGAATGAACTTGAAAATCTTCGCTCATCAGGATCTAAGAGCATTGTTTTTAGCCAGTGGACTGCTTTTCTAGACCTCTTGCAGATTCCCTTTACTCGGAATAAAATATCATTTGTTCGACTTGATGGGACATTGAGTTTGCAGCAGCGTGAAAAAGTAATCAAACAATTCTCAGAAGACAGCGACATACAGGTGTTGTTGATGTCGCTAAAAGCTGGTGGAGTGGGCATAAATCTAACAGCAGCTTCCAATGCTTTTGTCATGGACCCATGGTGGAATCCAGCTGTTGAGGAACAAGCTGTTATGCGAATTCATCGCATTGGACAAACAAAGACGGTGGCAATCAAACGGTTTATTGTGAAGGGGACAGTTGAGCAGAGAATGGAGGCAGTGCAAGCACGCAAACAACGAATGATTTCTGGTGCCTTGACTGACCAGGAAGTTCGATCTGCACGGATTGAGGAGTTGAAGATGCTTTTTACTTAG 3036 0.4348 MGSKVTDPNLSTVRSIVGSEFSDMDIIRALHMAKNDVTAAINIIFDTNTPKFKPTRTINKQRVSPPKSSPRAVTASSKKSNADVENKKCSVVSESDSELVDWWFVGSGEVAGLSTCKGRSLKSGDKVIFKFPTKKVSVSPSPGKGFGRAASCSEIVRFSNEQDWEIGRIPNEWARCLLPLVRDNKVRVDGKCEFAPNVLGIMDTINLSISVFINRSMFVKHHHVSLKDATSSTDESVFHPLPALFRLLGLSPFKKAELTPGDFYTNKRPFSQTVTSLHTKSEHPSQNGHENENEDPVSEFDLDNIVGVASSSELEEMDPPENLLCELRPYQKQALHWMIQMEKGRSRDETTTTLHPCWEAYRLADKRELVVYLNAFSGEATTEFPSTLQMARGGILADAMGLGKTVMTISLLIAHSGRGGSLGSQPIAQSFIEDVEVGDTGTVPKFSNIPKKATKFTGFDKLTKQNTSLSSGGNLIICPMTLLGQWKAEIETHVHPGSLSLYVHYGQSRPKDAKSLAQCNVVITTYGILASEFSSENAENNGGLFSIRWFRVVLDEAHTIKSSKSQVSMAASALIADNRWCLTGTPIQNNLEDVYSLLRFLRIEPWGHWAWWNKLIQKPFEGGDERGLKLVQSILKPIMLRRTKHSTDREGKPILVLPPADMQIIYCDPTEAEKDFYEALFKRSKVKFDKFVEQGRVLHNYASILELLLRLRQCCDHPFLVMSRGDTQEFSDLSKLAKRFLRGTGNASEGEVKDAVSRAYVEEVVEELRKGEQGECPICLEAFEDAVLTPCAHRLCRECLLASWRNSSSGLCPVCRKTISKQDLITAPTESRFQVDIEKNWVESCKITGLLNELENLRSSGSKSIVFSQWTAFLDLLQIPFTRNKISFVRLDGTLSLQQREKVIKQFSEDSDIQVLLMSLKAGGVGINLTAASNAFVMDPWWNPAVEEQAVMRIHRIGQTKTVAIKRFIVKGTVEQRMEAVQARKQRMISGALTDQEVRSARIEELKMLFT 1011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04665 1011 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 846 1011 IPR001650 -
Tsu02g04665 1011 SMART ultradead3 323 626 IPR014001 -
Tsu02g04665 1011 MobiDBLite consensus disorder prediction 54 81 - -
Tsu02g04665 1011 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 739 838 IPR013083 -
Tsu02g04665 1011 PANTHER DNA REPAIR PROTEIN RAD5 94 1011 - -
Tsu02g04665 1011 Pfam Helicase conserved C-terminal domain 847 958 IPR001650 -
Tsu02g04665 1011 SMART ring_2 776 815 IPR001841 -
Tsu02g04665 1011 MobiDBLite consensus disorder prediction 274 299 - -
Tsu02g04665 1011 MobiDBLite consensus disorder prediction 54 80 - -
Tsu02g04665 1011 CDD RING-HC 776 815 - -
Tsu02g04665 1011 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 654 1005 IPR027417 -
Tsu02g04665 1011 Pfam Zinc finger, C3HC4 type (RING finger) 773 821 - -
Tsu02g04665 1011 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 94 1011 - -
Tsu02g04665 1011 SMART HIRAN_2 105 213 IPR014905 GO:0003676|GO:0008270|GO:0016818
Tsu02g04665 1011 SMART helicmild6 875 958 IPR001650 -
Tsu02g04665 1011 Gene3D - 658 1011 IPR027417 -
Tsu02g04665 1011 CDD UBA_Cbl_like 9 47 - -
Tsu02g04665 1011 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 385 604 IPR014001 -
Tsu02g04665 1011 CDD DEXDc_SHPRH-like 327 642 - -
Tsu02g04665 1011 Gene3D - 452 643 IPR038718 -
Tsu02g04665 1011 ProSiteProfiles Zinc finger RING-type profile. 776 816 IPR001841 -
Tsu02g04665 1011 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 313 642 IPR027417 -
Tsu02g04665 1011 CDD SF2_C_SNF 842 969 - -
Tsu02g04665 1011 Gene3D - 384 432 IPR038718 -
Tsu02g04665 1011 Pfam SNF2-related domain 330 720 IPR000330 GO:0005524|GO:0140658
Tsu02g04665 1011 SUPERFAMILY RING/U-box 764 822 - -
Tsu02g04665 1011 ProSitePatterns Zinc finger RING-type signature. 791 800 IPR017907 -
Tsu02g04665 1011 Pfam HIRAN domain 106 209 IPR014905 GO:0003676|GO:0008270|GO:0016818
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04665 Tsu-Chr2 55686179 55695613 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04665 1 1011 RAD5 or RAD16-like Gene Family AT5G22750 70.424 0.0 1467
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Tsu02g04665 SNF2_N 5.8e-87 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04665 K15505 - gmx:100794558 1706.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04665 02 55686179 55695613 Tsu02g04665 02 55686179 55695613 ECH