Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04664 ATGGCCACAAATGACTCGTTGCTAAGCGCTCTTCCAATCGGCAACCCTGGCGCCACCACCTTTCGCTACCTCATTTCCGGTGTCTGCTGCAGTAGATCGGGAGAGGTTTCTCCTCTTTCGCACCAGAAGAGCCTTCTCCGCTGCATTGGTCTTCACACTGGTAATTGTCCATATTTGTTGAGATCGACTTCAGTGTATCCAGGCCTATACAAGGCATTGGATTTTGTAAAGGAAGTAAGCATGGAGTTTGCAGATGATAGGAAAAAGTATGATGAGTTTCTTACAATTCTAAAGGATTCTCGGAGGAATCTGACTGATTCAAGAGGAATAGCAGCAAGAATGGAGGAGTTGCTTAAAGGGCATACACATTTGCTCATCACATTCAGAACCTTCATCCCAAAGGAACATCAAATCAATCTTGACGGTAACGATGATGTTAAGGCTTATGAACCAGAAATCGAACAGCTTGAAAGAAAGTTATCGGACATTGTTAGAAGTAGGATTTAG 507 0.4359 MATNDSLLSALPIGNPGATTFRYLISGVCCSRSGEVSPLSHQKSLLRCIGLHTGNCPYLLRSTSVYPGLYKALDFVKEVSMEFADDRKKYDEFLTILKDSRRNLTDSRGIAARMEELLKGHTHLLITFRTFIPKEHQINLDGNDDVKAYEPEIEQLERKLSDIVRSRI 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04664 168 ProSiteProfiles PAH domain profile. 61 135 IPR003822 GO:0006355
Tsu02g04664 168 PANTHER SIN3B-RELATED 71 144 IPR039774 GO:0003714
Tsu02g04664 168 Pfam Paired amphipathic helix repeat 89 131 IPR003822 GO:0006355
Tsu02g04664 168 Gene3D Paired amphipathic helix 71 133 IPR036600 GO:0006355
Tsu02g04664 168 SUPERFAMILY PAH2 domain 70 135 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04664 Tsu-Chr2 55683579 55684669 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04664 72 145 WRKY Transcription Factor Family AT4G12020 41.892 1.46e-13 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tsu02g04664 PAH 3.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04664 K11644 - mtr:MTR_1g105960 74.7146