Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04661 ATGGTTGGAAGCATTAAAGCTTGCTTTGGAATTGGGGATGGTTTTATAGAATTGGATCTCAAGCTTTCAATCACGACTGCAGCAACACATATTGCTGAAACAGTTATTGGAATTATAGGGCTCAATCTTCTACTTGACAATAATGGCAATCTGAAGATTGCTGATTTTGCGCTTGCAACTCATTTTCAGCCATCTCAAGGGCAGCCTTTAACAAGGCGTGTAGTTACCTTGTGGTACCGGCCACCTGAAATTTTGCTTGGAGCTACAAATTATGGAGTTACTGTGGATTTGTGGAGTGCTGGTTGTATTCTTACAGAACTACTTGCTGGGAAGCCTATAATTCCTGGACGAACTGAGGAAGTTGAATTTTCCTCGAGTTAG 381 0.4147 MVGSIKACFGIGDGFIELDLKLSITTAATHIAETVIGIIGLNLLLDNNGNLKIADFALATHFQPSQGQPLTRRVVTLWYRPPEILLGATNYGVTVDLWSAGCILTELLAGKPIIPGRTEEVEFSSS 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04661 126 PANTHER CELL DIVISION PROTEIN KINASE 38 119 - -
Tsu02g04661 126 ProSiteProfiles Protein kinase domain profile. 1 126 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g04661 126 SUPERFAMILY Protein kinase-like (PK-like) 42 119 IPR011009 -
Tsu02g04661 126 Pfam Protein kinase domain 42 121 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g04661 126 PANTHER KINASE CDK9, PUTATIVE-RELATED 38 119 - -
Tsu02g04661 126 Gene3D Transferase(Phosphotransferase) domain 1 13 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04661 Tsu-Chr2 55651715 55654371 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04661 38 124 Core Cell Cycle Gene Families AT5G64960 59.770 1.72e-33 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Tsu02g04661 Pkinase 1.2e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04661 - K08819 cam:101495256 141.354