Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04660 ATGGAGTTTGCAGATGATAGGGAAAAGTATGATGAGTTTCTTACAATTCTAAAGGATTCTCGGAGGAATCTGACTGATTCAAGAGGAATAGCAGCAAGAATGGAGGAGTTGCTTAAAGGGCATACACATTTGCTCATCACATTCAGAACCTTCATCCCAAAGGAACATCAAATTACTCTTGACGGTAACGATGATGTTAAGGCTTATGAACCAGAAATCGAACAGCTTGGAAGAAAGGTATCAGACATTCTTAGAAGTAggatttag 267 0.3783 MEFADDREKYDEFLTILKDSRRNLTDSRGIAARMEELLKGHTHLLITFRTFIPKEHQITLDGNDDVKAYEPEIEQLGRKVSDILRSRI 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04660 88 ProSiteProfiles PAH domain profile. 1 55 IPR003822 GO:0006355
Tsu02g04660 88 Pfam Paired amphipathic helix repeat 8 51 IPR003822 GO:0006355
Tsu02g04660 88 PANTHER SIN3B-RELATED 2 64 IPR039774 GO:0003714
Tsu02g04660 88 SUPERFAMILY PAH2 domain 2 55 IPR036600 GO:0006355
Tsu02g04660 88 Gene3D Paired amphipathic helix 1 53 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04660 Tsu-Chr2 55643484 55643750 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04660 5 65 WRKY Transcription Factor Family AT4G12020 45.902 3.04e-14 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tsu02g04660 PAH 2.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04660 K11644 - ming:122076613 72.4034