Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04658 ATGAAGCTCCCAATGAAATCCAAATCAACGGAATCACAATCAGCTTCAAAGCGGAGAGGTCGACCGCCGCGAAAACAGcggaaaaaatataaagaaactGATGAATCCAGTAAGATTTCTAAGCCGATCGCGTTAATCGGGCGATATGTCTTGAAAGATTTTCCGAAAAGCTCTGTCCGAATCGGAAAAGTGATTAGTTATAGCACTGGATTTTATAGAGTGGATTATCAAGAAGGTGTTAGTGAAGATTTGGTTAGCAATGAAATTAGGAAATTACTTATTGAGGACTTTAATTTGGATGAAGAATTGATTCGACGAAAACATGAATTGGATGATGCATTGATGAGAAAGATAGTCGATGAATCGGATAAGAATTCGATCGAATTGAATGTGGAAAATGAAGAGGAATTGCCGGATGCAATGGTAACCGATGCTGATTTGAGTTCGGATGTTGAGACAGCGGTTGAATTGCCGCCGCAGTTAGAATTGCCACCGGAGTTGATGCTACCGCCTTCTTCAGGAACTATTGGTGTTCCTGAGAGTTGTGCTCATAATTTGTTTTCAGTTTACACATTTCTACGATCATTTAGCACCCGCTTATTCTTGAGTCCGTTTAGTTTGGAGGAATTTGTGGGCGCGCTGAATTGTGAAGTTTCGAATACACTGATTGACGCTGTACATAATGCTTTGATGCGTGCATTGAGACGCCATCTGGAGAATCTTTCAGCTGAGGGCTCAAAGATAGCATCTAGATGTCTTAGGTACAGTGAATGGAGCTTGCTTGATACATTGACTTGGCCTGTTTTCTTAATTCAATATTTAGCAGTTAATGGATGCACTAACGGTTCTGAGTGGAAAGGATTTTATGACGAGATTTTTCATGGCGAGTATTATTCATTGCCTGCAAGTAGGAAGTTAACAATATTACAAATTCTCTGCGATGATGTTTTGGAGTCTGAGGAGCTAAGAGCTGAAATGAACATGCGTGAAGAATCAGAAGCCGGGAAGAATTATGATGCCGAGGATATTCCTCACGTGGAAAAGGGACCGAAAAGAGTCCATCGACGATGTGCCAAAACTGCTGATTGCCAGGATGAAGAATCTATGAAGTTTGTTTCAAAATTAGATGCTGTGAACTTACCTGGTAATTCTGAGGATGAGGTTGATAGAAATGGAGATGAATGTCGCCTGTGTGGCATGGATGGGACCTTGCTTTGTTGTGATGGATGTCCTGCTGTTTATCATTCAAGGTGTATTGGTGTGATGAAGATGTATATATCAGATGGGGAATGGCATTGTCCAGAATgcaaaataaatacaattgGGCCAACAATTGCACGGGGAACATCTCTTAGGGGGGCCGAAATGTTTGGAAATGATTTGTACGGGCAATTTTTCATCGGTACCTGCGACCACTTACTTGTGCTCAGTGGCAACAACGGGGAAGTTTGTCGTAAATACTACAATCAGAATGACATTCCTGAAGTTATCCGAGTGCTTTGTGCTTCCATTCAACATAGACCTGTATACTCTGGTATTTGCATGGCGATGTTACAATATTGGAATATTTCAGAAAGCTTCCAACACCTTTGCGTTCCAAATGGAACACATCTAAACTCAGAAAATTCAAAGATAGATGAAAATATCTCTGCTGAATTACTTCCTCATGTGGTTGAAAATGACCACAAAGATGTTAGTTTGGGGACAGAATATGGTCGAACCCCATCTCTTGATGCTATTCCTGCCAAGAGCACCTTGGTAAGCAATCAATTTAATAATTGTGGGCAAACTAAAGGTGACTTAACTGGTTCTGGAAAGTCTAACGATTTTGTGTATAGGGGTTGTTCCTATAAACCCCAAGCATATGTTAACAGTTATATGCATGGGGATTTTGCTGCATCTGCAGCTGCTAATATGGCCGTGCTTTGTTCAGAAGATTCTAGACCAGAGGGTCACGTGTCTGACTTGAGGAAAGCTACATCTGAAAACACTAACCTGTTAGCAAAAGCATTTTCACTAACAGCTTCACGCTTCTTTTGGCCAAGTTCTGACAAGAAGCTTGCGGAGGTTATAAGAGAGAGGTGTGGCTGGTGCCTTTCTTGTAAAGCCCTTGTTCCAAGCAAGAAAGGATGCATGTTAAATCATGCTGCTATATGTGCTACCAAAAGTGCCATGAAAGTCCTTTCTGGTCTTGCTCCTGTAAGGAGTGGGGAAGGAATTAGCCCTACAATTGCAACCTATGTCATATATATGGAGGAAAGCTTATGTGGTTTAATAAACGGGCCCTTTCTTAGCGGAAACTATAGAAAGCAATGGCGTGAACAAATGGAAAGGGCCACATCATTTAGTAACATAAAGCCTCTTTTACTTAATCTTGAGGAGAACATTCGCACAATTGCTTTTTGTGGTGACTGGGTGAAGCTTGCGGATGAGTGGTTGGTTGAATCTCCTACAATTCAAAGTGCTACATCTACTCTTGGAACAACACAGGAACGTGCACCATGCAACAGATGTAGAAAATTACCTATCAAATATCCATTTGACACTTCCCCTGAAAACTTTGGCTGGTGGAATGGAAAATTTACCAAATCTGTATTTCAGAAAGCTGCATTGCCAAAATTTATGGTCAGAAAAGCAGCTCGGCAAGGTGGTTTGAGGAAAATCTTGGGTATTGTCTATCCTGAAGTCTCTGTAATTCCTAAAAGAAGCCGTCAACTGTTTTGGAGAGCTGCCGTTGAGATGAGTAGGAATGCATCACAGCTCGCACTTCAGGTCCGATATTTAGATTTTCATATCAGATGGATTGATCTGATTCGGCCGGAGTATAACCTCCTGGATGGAAAAGGTCAAGATACTGAAGTTTCTGCTTTTAGAAATGCAATTATTTGTGACAAAAAATTTGCACAGGGCAAAACATCCTATGGTGTAGATTTTGGGAGCCAAAAGCATATTCCTTCTCGGATAATGAAGAATGCTGAAACAATAGATGAAGCGCCAGATGGAAAGAAGTATTGGTTTTCTGAAACATGCATTCCTTTATATTTGGTGAAAGAGTATGaagtaagaaacaaaaaagagcCATCTCATAAAGATAACTTGAATGTTGCATCTCGATGGCACAAAAGGCGGTTGAATGCTATCTGCAAGGACGTATTTTTTTACCTCACTTGCAAGAGAGACAAAACGGACATGTTACCATGTTCTGTATGTAATCTGGGTGTTTTATTTAGGAATGCTCTCAAGTGTAGTGCATGTCAAGGTTATTGTCACGAGGGCTGTTCAATAAATTCAACATTCTCTACATATAAAGATGTTGAGTTCTTGATCACATGCAAAAAATGTTATCATACCAGATTACTTACTCAGAAGGAGACCGGTAACAAATCTATAACCAGCCCCTTACTGTTAAAAGGAAGAGAACATGGCTCTTCGACAATTTTGAAGAAACCAGAGCCTAAATGTGATGATCAAATGCCGAGATCTACCAGGGTAAAGGATTGTTTTCCTGACATGAAAAAAGTTGCTTCCCAGACCCCTCAGGAAACCAAAAGCAGTAGCAGAAAATCATCTTGGGGTATTATATGGAAAAGGAATAATAGCGAAGACACAGGCATTGATTTCAGGCTAAAAAACATAATTATGAAGCGACCCCGTTCAAGCTTGCCTCAATTGGAACCTGTTTGTCACTTATGCCATAAGCCATATAACTCTGATCTAATGTATATAGGCTGTGAAACATGTACCAGGTGGTATCATGCTGAAGCTCTTGAACTTGAAGAGTCCAAAATATTTTCTATGCTGGGCTTCAAATGTTGCAGGTGTCGCAAGATAAAGTCACCTGTGTGTCCTTACTCTGATTCGGTGTGCAAGGAGCAAGTTGGAGAGAAGTCACACTCACGGGCTTCTAAGAGAAAAAATTATGGAGCAGATTCTTCTGGTTCTGGAACACTAACTGACACAAGAGCAAGGGAGCCTGCTACTCCTATCATTCCTGCAGAAGATGTTTCTAAACAAGAGAACAGTCCTCTTCCGTTTTCTCTTTCAAATGTCGAACTGATTACAGAACCCATGTCAGAGTTAGATGCAGGCATTGAGTGTAACATCGTCTCTGGGTCAGGGCTTCAGAAAATACCCGAGGAGGAAAGTAATGGCACTTTGGGTGAAGTTCGGCATGCTGAAATTTCAACACAGGATGAAATGGATAATGTTCCTGCAGAGGTTTTACCACCTTTTGTAGAACTTGACTCTGTGTTCTCTGATTGcgatcttctgaatgactcgGAAACTTTTGATAATGAATACATGGAGTTTGAATCCCAAACTGATTTCTCCCTGTCTGAACTTCTGAACCTAGATAATGAGGAAGCTGATGTGCCCAGGGACTTGTCAGGATTTGCAAATGATTCTTGTACACTAGGTGTTCCTGAAGAATGTGCAATCACTAGCTTACAGAACAACCAGGAGCCTACAATTTCATCACATCGAAATGTTCATAATTGTTCGCTATGTTCACAAACAGAACCAGCCCCCGATCTCTCTTGTCAGATTTGTAAGATATGGATTCACAGCAAGTGTTCACCCTGGATTGAATCACCATCTAGGCTTGGAGATTGGAGATGTGGTAATTGCAGGGAATGGCAATAA 4644 0.404 MKLPMKSKSTESQSASKRRGRPPRKQRKKYKETDESSKISKPIALIGRYVLKDFPKSSVRIGKVISYSTGFYRVDYQEGVSEDLVSNEIRKLLIEDFNLDEELIRRKHELDDALMRKIVDESDKNSIELNVENEEELPDAMVTDADLSSDVETAVELPPQLELPPELMLPPSSGTIGVPESCAHNLFSVYTFLRSFSTRLFLSPFSLEEFVGALNCEVSNTLIDAVHNALMRALRRHLENLSAEGSKIASRCLRYSEWSLLDTLTWPVFLIQYLAVNGCTNGSEWKGFYDEIFHGEYYSLPASRKLTILQILCDDVLESEELRAEMNMREESEAGKNYDAEDIPHVEKGPKRVHRRCAKTADCQDEESMKFVSKLDAVNLPGNSEDEVDRNGDECRLCGMDGTLLCCDGCPAVYHSRCIGVMKMYISDGEWHCPECKINTIGPTIARGTSLRGAEMFGNDLYGQFFIGTCDHLLVLSGNNGEVCRKYYNQNDIPEVIRVLCASIQHRPVYSGICMAMLQYWNISESFQHLCVPNGTHLNSENSKIDENISAELLPHVVENDHKDVSLGTEYGRTPSLDAIPAKSTLVSNQFNNCGQTKGDLTGSGKSNDFVYRGCSYKPQAYVNSYMHGDFAASAAANMAVLCSEDSRPEGHVSDLRKATSENTNLLAKAFSLTASRFFWPSSDKKLAEVIRERCGWCLSCKALVPSKKGCMLNHAAICATKSAMKVLSGLAPVRSGEGISPTIATYVIYMEESLCGLINGPFLSGNYRKQWREQMERATSFSNIKPLLLNLEENIRTIAFCGDWVKLADEWLVESPTIQSATSTLGTTQERAPCNRCRKLPIKYPFDTSPENFGWWNGKFTKSVFQKAALPKFMVRKAARQGGLRKILGIVYPEVSVIPKRSRQLFWRAAVEMSRNASQLALQVRYLDFHIRWIDLIRPEYNLLDGKGQDTEVSAFRNAIICDKKFAQGKTSYGVDFGSQKHIPSRIMKNAETIDEAPDGKKYWFSETCIPLYLVKEYEVRNKKEPSHKDNLNVASRWHKRRLNAICKDVFFYLTCKRDKTDMLPCSVCNLGVLFRNALKCSACQGYCHEGCSINSTFSTYKDVEFLITCKKCYHTRLLTQKETGNKSITSPLLLKGREHGSSTILKKPEPKCDDQMPRSTRVKDCFPDMKKVASQTPQETKSSSRKSSWGIIWKRNNSEDTGIDFRLKNIIMKRPRSSLPQLEPVCHLCHKPYNSDLMYIGCETCTRWYHAEALELEESKIFSMLGFKCCRCRKIKSPVCPYSDSVCKEQVGEKSHSRASKRKNYGADSSGSGTLTDTRAREPATPIIPAEDVSKQENSPLPFSLSNVELITEPMSELDAGIECNIVSGSGLQKIPEEESNGTLGEVRHAEISTQDEMDNVPAEVLPPFVELDSVFSDCDLLNDSETFDNEYMEFESQTDFSLSELLNLDNEEADVPRDLSGFANDSCTLGVPEECAITSLQNNQEPTISSHRNVHNCSLCSQTEPAPDLSCQICKIWIHSKCSPWIESPSRLGDWRCGNCREWQ 1547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04658 1547 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 382 459 IPR013083 -
Tsu02g04658 1547 PANTHER PHD FINGER FAMILY PROTEIN 17 1544 - -
Tsu02g04658 1547 SMART testlast3 180 240 IPR018501 -
Tsu02g04658 1547 SUPERFAMILY FYVE/PHD zinc finger 1494 1544 IPR011011 -
Tsu02g04658 1547 ProSiteProfiles DDT domain profile. 180 240 IPR018501 -
Tsu02g04658 1547 MobiDBLite consensus disorder prediction 1306 1321 - -
Tsu02g04658 1547 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1223 1281 IPR013083 -
Tsu02g04658 1547 SUPERFAMILY FYVE/PHD zinc finger 1225 1281 IPR011011 -
Tsu02g04658 1547 SUPERFAMILY FYVE/PHD zinc finger 380 439 IPR011011 -
Tsu02g04658 1547 ProSiteProfiles Zinc finger PHD-type profile. 392 439 IPR019787 -
Tsu02g04658 1547 MobiDBLite consensus disorder prediction 1299 1324 - -
Tsu02g04658 1547 PANTHER DNA-BINDING AND ZINC-FINGER PROTEIN 17 1544 - -
Tsu02g04658 1547 MobiDBLite consensus disorder prediction 1 36 - -
Tsu02g04658 1547 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 284 327 IPR028942 -
Tsu02g04658 1547 CDD PHD_SF 1500 1543 - -
Tsu02g04658 1547 CDD PHD_SF 1227 1274 - -
Tsu02g04658 1547 ProSitePatterns Zinc finger PHD-type signature. 395 436 IPR019786 -
Tsu02g04658 1547 SMART PHD_3 394 437 IPR001965 -
Tsu02g04658 1547 SMART PHD_3 1227 1275 IPR001965 -
Tsu02g04658 1547 SMART PHD_3 1499 1544 IPR001965 -
Tsu02g04658 1547 SMART PHD_3 1066 1115 IPR001965 -
Tsu02g04658 1547 Pfam DDT domain 182 237 IPR018501 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04658 Tsu-Chr2 55615245 55622031 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04658 42 1547 PHD Transcription Factor Family AT5G35210 42.061 0.0 1076
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Tsu02g04658 DDT 1.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04658 - - mtr:MTR_2g084620 1986.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04658 02 55615245 55622031 Tsu02g04658 02 55615245 55622031 ECH
Tsu02g04658 02 55615245 55622031 Tsu02g03716 02 41998153 41999547 PCT