Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04655 ATgaggaaaagaaataaaaaacaatctttTGATTCATCAACAATTGATAAACTAGCTAAGGTTTCATACCAAGAATTGCATCAAAGAACCGATGGGTTCTCGCCTACAAACTTGATTGGATCAAGAAATTTTGGTTCTGTGTACAAAGCAAATCTTGAGTCAGAAGATCGTGTTGTTGCCGTAACGGTTGTGAACCTCCAAAAAAAGGGAGCTCACAAGAGTTTCATTGTTGAATGTAATGCACTCAAAAATATTAGACACCGAAATTTAGTTAAGATTTCAACTTGTTGTtttagtacaaattacaaaggTCAAGAATTCAAAGCTCTAGTTTTCGATTACATTAAAAATGGAAGTTTAGAACAATGGTTGCATCCCGAGATTTTAAATGAAGAGAATCCAACAACATTGAGCCTTGGTCAAAGATTAAACATAATTATTGATGTTGCTGATGCATTACATTATCTTCATCAAGAATGTGAGAAATTGGTCCTTCATTGTGATCTAAAGTCAAGCAATGTCCTTCTTGATATTGACATGGTTGCTCATGTGAGTGATTTTGGAATAGCAAGACTCTTCTCATCCATTGGCGGCAATTCTCAGAAGGATGCCAGTACACTTGGAATAAAAGGGACAGTTGGTTATGCTCCTCCAGATATGTTCTAA 666 0.3363 MRKRNKKQSFDSSTIDKLAKVSYQELHQRTDGFSPTNLIGSRNFGSVYKANLESEDRVVAVTVVNLQKKGAHKSFIVECNALKNIRHRNLVKISTCCFSTNYKGQEFKALVFDYIKNGSLEQWLHPEILNEENPTTLSLGQRLNIIIDVADALHYLHQECEKLVLHCDLKSSNVLLDIDMVAHVSDFGIARLFSSIGGNSQKDASTLGIKGTVGYAPPDMF 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04655 221 SMART serkin_6 33 221 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g04655 221 ProSiteProfiles Protein kinase domain profile. 33 221 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g04655 221 Gene3D Phosphorylase Kinase; domain 1 1 114 - -
Tsu02g04655 221 PANTHER OS04G0122200 PROTEIN 1 219 - -
Tsu02g04655 221 Pfam Protein kinase domain 37 219 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g04655 221 Gene3D Transferase(Phosphotransferase) domain 1 115 221 - -
Tsu02g04655 221 PANTHER LRR RECEPTOR-LIKE KINASE 1 219 - -
Tsu02g04655 221 SUPERFAMILY Protein kinase-like (PK-like) 7 220 IPR011009 -
Tsu02g04655 221 ProSitePatterns Serine/Threonine protein kinases active-site signature. 164 176 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04655 Tsu-Chr2 55585551 55586216 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04655 1 219 Receptor kinase-like Gene Family AT3G47580 50.000 1.27e-71 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Tsu02g04655 Pkinase 1.4e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04655 - - mtr:MTR_5g025930 343.584