Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04649 ATGGCGGAGGACCGTAAAGATGGGAGTGATTACAGTTCAGAGGATGAAGGAACTGAAGATTACAGACGCGGTGGATATCATGCTGTTCAAATTGGTGATACTTTCAAACATGGATGTTATGTGATTCAGAGTAAACTTGGTTGGGGTCATTTTTCAACTGTTTGGCTTGCTTGGGATACTCAGAAATTGCGATATGTTGctttaaaaattcaaaagagtGCTCAGCACTACACGGAAGCGGCAATGGATGAAATAAAGATTCTTAAACAAATTGCTGAAGGGGATCTAGAGGACAAGAAATGTGTTGTGAAGCTTTTGGACCACTTTAAGCATTCAGGGCCTAATGGTCAGCATGTTTGTATGGTTTTTGAATTCCTTGGTGATAATCTACTCACACTTATCAAGTATAGTGATTATCGTGGTGTTCCCCTTTCCATGGTCAAAGAAATTTGTTACCATGTTTTGGTCGGTTTGGACTATTTGCATCGCCAGCTTTCTATAATACACACTGATTTGAAGCCGGAGAATGTCTTGCTTATTTCTCCAATTGATCCATCTAAGGATCCTATAAAATCAGGAGTCCCACTTGTACTTCCAAACACCAAGGGCAAGACTTTGTCCAAGAACGGGACCACAAAAGATGATAAGAGTTCAAATGGAGATCTAACGAAGaaccagaaaaagaaaatgCGGAAAAAGGCTAAAAAAGCAGCTCAGAAGGAAGGTCCTGAGGTAGCAGAGGAGGATTCTGAAGCACCTGAGCTAGATAATTGTAGTAATGATGTGAAACCAAATGCAGAAAATGGTGAAAGTAAATCTGATATTCCCACAAGTAAAGATGAATCAGCAAAGACTAATGAAATTAAGGATGTTCCTCAAGGAAGTCAAGTCTCTAGGAGAGGTAGTCGCTCTACCAGAAAGAAGTTGCTCGAAGCTGTCGATCTTAAGTGCAAACTGGTGGATTTTGGCAATGCTTGTTGGACGTATAAACAATTTACTAATGATATTCAGACTAGGCAGTATAGATGTCCTGAGGTTCTTCTTGGTTCTAAATACTCAACTCCAGCCGATATGTGGTCCTTTGCTTGCATTTGCTTTGAGCTTGCCACTGGCGATGTTCTTTTTGATCCTCACAGCGGTGATAACTATGACAGGGATGAGGATCATCTAGCATTGATGATGGAGCTTCTTGGAATGATGCCTCGCAAGATTGCACTTGGCGGCCGTTATTCCCGGGACTTTTTCAATAGATATGGTGATTTGAGACACATTCGCCGGTTGCGATTCTGGCCTATTACAAAGGTGCTGACGGAGAAGTATGATTTCAGCGAGCAAGATGCAAGTGACATGTCTGACTTCCTTGTTCCATTACTTGACTTTGTTCCTGAAAAGAGGCCAACGGCCGCTCAGTGCCTTACTCATCCATGGATGAGTGCCGGTCCTCGGACTCTTGAGCCCTCACTGACTAACATGCAACCTGATGCTATCAATGGAGAAAAGTCTGtaaaggtgaaagaaaaaacCGAGCAAGAGGCCGTGGAAGTTAGTATGGGGAATATGGCCATTGATGGAATTCCAAAACCACTCAAAGATTTCCAATCTACAAAACCATCGGCATAG 1620 0.413 MAEDRKDGSDYSSEDEGTEDYRRGGYHAVQIGDTFKHGCYVIQSKLGWGHFSTVWLAWDTQKLRYVALKIQKSAQHYTEAAMDEIKILKQIAEGDLEDKKCVVKLLDHFKHSGPNGQHVCMVFEFLGDNLLTLIKYSDYRGVPLSMVKEICYHVLVGLDYLHRQLSIIHTDLKPENVLLISPIDPSKDPIKSGVPLVLPNTKGKTLSKNGTTKDDKSSNGDLTKNQKKKMRKKAKKAAQKEGPEVAEEDSEAPELDNCSNDVKPNAENGESKSDIPTSKDESAKTNEIKDVPQGSQVSRRGSRSTRKKLLEAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADMWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIALGGRYSRDFFNRYGDLRHIRRLRFWPITKVLTEKYDFSEQDASDMSDFLVPLLDFVPEKRPTAAQCLTHPWMSAGPRTLEPSLTNMQPDAINGEKSVKVKEKTEQEAVEVSMGNMAIDGIPKPLKDFQSTKPSA 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04649 539 MobiDBLite consensus disorder prediction 208 225 - -
Tsu02g04649 539 CDD STKc_SRPK 29 477 - -
Tsu02g04649 539 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 8 536 - -
Tsu02g04649 539 Pfam Protein kinase domain 40 179 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g04649 539 Pfam Protein kinase domain 314 477 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g04649 539 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672|GO:0006468
Tsu02g04649 539 Gene3D Phosphorylase Kinase; domain 1 16 122 - -
Tsu02g04649 539 MobiDBLite consensus disorder prediction 273 287 - -
Tsu02g04649 539 MobiDBLite consensus disorder prediction 190 305 - -
Tsu02g04649 539 SMART serkin_6 40 477 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g04649 539 ProSiteProfiles Protein kinase domain profile. 40 477 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g04649 539 ProSitePatterns Protein kinases ATP-binding region signature. 46 69 IPR017441 GO:0005524
Tsu02g04649 539 Gene3D Transferase(Phosphotransferase) domain 1 123 478 - -
Tsu02g04649 539 PANTHER SERINE KINASE-LIKE PROTEIN 8 536 - -
Tsu02g04649 539 SUPERFAMILY Protein kinase-like (PK-like) 35 486 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04649 Tsu-Chr2 55496609 55501236 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04649 7 524 EF-hand Containing Proteins AT5G22840 70.746 0.0 743
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Tsu02g04649 Pkinase 4.8e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04649 K08832 - gmx:100791829 905.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04649 02 55496609 55501236 Tsu02g04649 02 55496609 55501236 ECH
Tsu02g04649 02 55496609 55501236 Tsu02g03695 02 41688451 41692747 PCT