Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04637 ATGGCTGTTGCTGGAGTGCACAATGCAGCTGTGGTGGAGTCTACGTTTTTGAGGGACTCTCATTCTCGGTCACCAAGGAGGCAAGAAGATGGAGGGAGGGGAGGTACCCGGTCATCTTCGCTCTTGCAAATGTGGCGTGAGCTTGAAGATGAGCATGTGGTGAGACAGGTTCAAGGAAGATCTGATGAAGTATTAGTTCAACAGAGGAGTGACGGGTTGGTTGTAGACGAATCACAGGAAAATATGAATCATATATCAGAAGATGCAGTTTTGGGTGACAATGATTCTGAAACATGGTCACAGTCACAGAGTCAGAATGGGTCTCAATATGAACAGGATCAGGTGGACTTGAACAATTCTAGTCGTGAAAACTCTTCTGGTATTGGAGATGTTGGGAGGGAAAGAGTAAGGAAAGTTTTCAAGGAATGGATGAGTAGTGGTGGTTCTAGGGTTCAAGGATCAAATATTACTCGAGGAAATAGTGGTTTGAGGGGTGAATTGCGTGGGAAAACTGAGCAGGAAAGAGTGAGTGTTGTAAGGCAATGGGTAGAGATGAGTAGCCAGCTGAGAGGTGTTTCTGTTGGGGAGAATAGGGAAGAACAGTCTGCTGAATTTAGTAACCAAACTGAATGTGTTCATGATGGATTGGTTGTCAATCAGAATGAAGGCCAAAGTGAGCATATATCACGAAGAAGAATCCGTAAATTACGTGGTCGGCAGTTTCTGCTTGATATGGTTAAAACGGATGTGATGCAAAGGGAAAGAGAGATTCAGGAACTGTTGGAACGTCGGGCTGTATCTCATTTTCCCCATCGCAATCGTATTCAGGCCTTGCTTAGAGGCAGGTTTTTGAGAAATGATAGACCCATTGATAATAATCGGCCCACTTCCATTGCAGAAAGTGAATTAGGCTTATTGAGACAAAAACAGACTGTATCATGTCTAAGGGAAGGATTTTCTTTTAGAAAGGACAATTTAGGTTATGGTCAAGCAGCAAGCAACCTATCTGATACCTCATCTAACAGTGATATTGATGTCGATACAATTGAACAAACTGGAGCTACAAGTTCACAAGTAGTCGCCTCTGTACATTCTGAACAATCAAATCTTAATAATAAGGGAAGTGACAGACTTGGGATATCATGTGCTCATGAGGAAGAAACAAGAAATTGGGAGTCTTCCAATATCAGTGTTGAAAGAAGAGACGGCACTGCACAAAATGTTGATACAATGCCAATCGAAGATACCGGCAATGACCTTACCCAACCAAGTGTGCGAATTGAAGTTACGGACCATAGCAATATGCAAGAACAAGAACCAAGTGATGCACATATTGAGCAATCTCTGAGGGGTGATTTAACTGGTGATGAAAGCAATCCATCAAATCACAACAATCGTGTAGGGGGCAATATTGTTGATAATGTAGATATGGTTTCGGTGGTATCTACTGCTCTGGAAAGAGAGCAAGAGGAAGAAACTATTATTGAAAGTGAAGGAAGTGAATGGCATCAAACTAACAGAGAGTGGAGAGATAGCCCCCAGGAAAGTGTCGACGATAATCAGCACAGTAGCACATCAAATGAATGGCCCCAAAATATCTTGGGAAATGATGATGGAGATAATTCTCGTACTCAAGAGCAAGTAGCAGCCTCTGAAGTGTGGCAAGAAGATGGCAGCTTTCAAGAGGCTGTGGAAATTTGGTTGGGAGGACCTTCTGATAATGGAGCAGCTCCAGTTGGTAGAATTCATGGATTCTATTTTCCAGAAGATGACAATGTGTACAGTGTTGAACTCAGGGAGCTGCTAAGTAGGAGAAGTGTCTCAAACCTCCTACGAAGCAGTTTTCGTGAAAGTCTTGACCAGTTGATACAATCATATGTTGAAAGGCAAGGTCATGCTCACGTTGAGTGGGAGGAGCTGCAAGAAACAACCCCTTCGTCTCCCTCCACAGAACAAGACGTGGATCAGCATAGAAGGGATCAGATTGTTGGTACGGAGGACATTGTCAATAGTTCACTGAACCTGCCTTTACCACCACCAACTCCTCCTCCTTTGCCTTCATGGGATCGACACTCACGTCATGACAATTGGTCACGGAATGGCATAAATAATCAGCGTCGAGGAAATATGCATTCATTTGCAGGACACAACCGCTTTCCTTTAGCTGATGAGTGGGATAGTATTGGTGACTTGAGAATTGACATGGTTAGGCTACAGCAAAGGATGAATAATATGCAGAGAATGCTAGAAGCCTGTATGGATATGCAGCTTGAGTTGCAACGCTCAATTAGACAAGAAGTCTCTGCAGCCCTTAATCGCTCAACTTGTTCATCAGGAGTACATGACCATGTTTTACCAGACAATAAAACTAATTGGGAATGTGTGAGGAAAGGACTTTGCTGTATATGCTGTGAAAGCAGTATTGATTGTTTGTTGTACAGATGTGGGCACATGTGCACTTGTTCAAAATGTGCAAATCAATTGCTAGATAGTAGAAGAAAGTGTCCAATGTGTCGAGCACCAGTGGTGGAAGTGGTTCGTGCATAttctatataa 2556 0.4296 MAVAGVHNAAVVESTFLRDSHSRSPRRQEDGGRGGTRSSSLLQMWRELEDEHVVRQVQGRSDEVLVQQRSDGLVVDESQENMNHISEDAVLGDNDSETWSQSQSQNGSQYEQDQVDLNNSSRENSSGIGDVGRERVRKVFKEWMSSGGSRVQGSNITRGNSGLRGELRGKTEQERVSVVRQWVEMSSQLRGVSVGENREEQSAEFSNQTECVHDGLVVNQNEGQSEHISRRRIRKLRGRQFLLDMVKTDVMQREREIQELLERRAVSHFPHRNRIQALLRGRFLRNDRPIDNNRPTSIAESELGLLRQKQTVSCLREGFSFRKDNLGYGQAASNLSDTSSNSDIDVDTIEQTGATSSQVVASVHSEQSNLNNKGSDRLGISCAHEEETRNWESSNISVERRDGTAQNVDTMPIEDTGNDLTQPSVRIEVTDHSNMQEQEPSDAHIEQSLRGDLTGDESNPSNHNNRVGGNIVDNVDMVSVVSTALEREQEEETIIESEGSEWHQTNREWRDSPQESVDDNQHSSTSNEWPQNILGNDDGDNSRTQEQVAASEVWQEDGSFQEAVEIWLGGPSDNGAAPVGRIHGFYFPEDDNVYSVELRELLSRRSVSNLLRSSFRESLDQLIQSYVERQGHAHVEWEELQETTPSSPSTEQDVDQHRRDQIVGTEDIVNSSLNLPLPPPTPPPLPSWDRHSRHDNWSRNGINNQRRGNMHSFAGHNRFPLADEWDSIGDLRIDMVRLQQRMNNMQRMLEACMDMQLELQRSIRQEVSAALNRSTCSSGVHDHVLPDNKTNWECVRKGLCCICCESSIDCLLYRCGHMCTCSKCANQLLDSRRKCPMCRAPVVEVVRAYSI 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04637 851 Coils Coil 728 755 - -
Tsu02g04637 851 MobiDBLite consensus disorder prediction 486 556 - -
Tsu02g04637 851 MobiDBLite consensus disorder prediction 148 169 - -
Tsu02g04637 851 MobiDBLite consensus disorder prediction 638 658 - -
Tsu02g04637 851 MobiDBLite consensus disorder prediction 93 127 - -
Tsu02g04637 851 MobiDBLite consensus disorder prediction 452 469 - -
Tsu02g04637 851 MobiDBLite consensus disorder prediction 486 517 - -
Tsu02g04637 851 Pfam Zinc finger, C3HC4 type (RING finger) 797 844 - -
Tsu02g04637 851 Coils Coil 243 263 - -
Tsu02g04637 851 MobiDBLite consensus disorder prediction 397 423 - -
Tsu02g04637 851 MobiDBLite consensus disorder prediction 518 554 - -
Tsu02g04637 851 SUPERFAMILY RING/U-box 787 845 - -
Tsu02g04637 851 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 851 - -
Tsu02g04637 851 MobiDBLite consensus disorder prediction 385 423 - -
Tsu02g04637 851 MobiDBLite consensus disorder prediction 93 130 - -
Tsu02g04637 851 MobiDBLite consensus disorder prediction 451 471 - -
Tsu02g04637 851 MobiDBLite consensus disorder prediction 19 33 - -
Tsu02g04637 851 MobiDBLite consensus disorder prediction 16 38 - -
Tsu02g04637 851 CDD mRING-HC-C3HC5_NEU1 800 839 - -
Tsu02g04637 851 PANTHER PROTEIN, PUTATIVE-RELATED 1 851 - -
Tsu02g04637 851 ProSiteProfiles Zinc finger RING-type profile. 800 839 IPR001841 -
Tsu02g04637 851 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 785 850 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04637 Tsu-Chr2 55369448 55376275 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04637 800 846 C3H Transcription Factor Family AT3G06140 40.426 3.22e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04637 - - vun:114184870 1051.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04637 02 55369448 55376275 Tsu02g04637 02 55369448 55376275 ECH
Tsu02g04637 02 55369448 55376275 Tsu02g03686 02 41545140 41550250 ECH
Tsu02g04637 02 55369448 55376275 Tsu02g03686 02 41545140 41550250 PCT