Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04636 ATGGCGAAAGGAACAAATTCCGATGAGTTTATGGTTCTTTCTAGGGTTAGAACAGGTTTGAAGAGAGAGTTTGCATTTGCAATGAAGGCACAATCTGAGATCGATGGTTCTTTGGGTAGAACAAGGGGTGGTAGTAAGAACCGGAATGAGGCACCGGTTCAAGAAACTCCGGTTGGGAAAAAACCAAGGAAAACCGGTTTGGATGATGTGGGGGGTGTAATGAGTGAAGAAGAGGCTAAAAGTGATGTTGTGGATCTTGttagtgatgatgaacctaGGGTTTTGGTTAGTGAATTGGAATCTGTTAAGAGTGTTGTTGAAACtgttattgatgatgatgaaacccTTTTGGTTGATGAgaatttgaatgaagaaaaagaaaaagttgtgaATGAAGTTGAAATGGAAATTTGTGAAACAAAAGAGGAACAAAAAGATGATGAAACTAAGGATAATGTTAGTGTTAGGAAAAAGAAGGTGATTTTGGAGAAACCAATGAGAAGGTTTACAAGATCAGCATTGAaacaaaaagatgaagaaagtaAGGATAATGTTGTTGGAATGGTTGATAATGTTGTTAATAGGGAAACTGAGATTTTATCTGGTGTGATAACACCGACTCCGATGAAATTGTCTAAGTCTGGTTTGAAGAGGTTTCCTGTCAAGTTGAAGGATCTTTTGGCTACTGGGATTCTTGAAGGGTTGAAAGTGAGATATGTCAAGGGACAAAAGGCGCGTAAACCTGGAGAAAAAGATTTGCCAGGAGTGATTAAAGATGCCGGGGTTTTGTGCTTTTGTGAGAGTTGTAAGGGGACTAATGTTGTCACGCCGACTGTTTTTGAGTTGCATGCTGGTAGTGCCAATAAACGTCCGCCGGAGTATACTTACCTTGAGAATGGAAAACCTCTTCGTGATGTCATGAATGCATGTTGTGGTTTTTCATTGGATAAGTTGGACGAAGCTGTCCAATTGGTGCTTGGTGATTTCACTATGCAGCAATCTAATATCTGTTTCAGTTGCAGAGAGCCAATTTCTGAATCTAGTAATGGTGTGTCAAAACTCGTATGCAATTCATGCATGGAGTTGAAAGAGGCTCAAACTAGTAGCCAACTTCAAACAGCAGCAACAGGCAGTAAAAGTATTCCCCAAGTAGTTCAACCCAgATCACCAGAAGCAGTAGTAGTTCCAGAGTCATTAAACACTGGGATGGCGGTTCCAAAGTCATTAAAGACTGAGACGGCGGTTCCAAACTCGTTGAACACTGAGATGGCGGTACCAGAGTCATCAAACACCCAGATGATTCCAAAGCCATTAAGCACTAGGATGAAGCAGAGCGCATCTCGTGGCAAGAGTCGGGGAAAAATTACTAGAAAGGATCTAGGGTTGCATAAGTTGGTATTTGAAGAGGATGTGTTAGTAAATGGAACTGAATTAGCTTACTATTCTCATGGAAAGAAACTATTGGTCGGTGAAAAACAGGGATACGGAATTAAATGTTCCTGTTGCGATACGGAGATTAGTGCTTCTCAGTTTGAAGCTCATGCTGGATGGGCATCTCGACGCAAGCCTTACCTGCACATTTATACATCTAATGGAGTCTCACTACATGAGTTGTCCCTCTCTATATCGAAAGATCGGAGATTTTCTGCCAGTGATAATGATGACCTTTGCAGCATATGTCAAGATGGAGGGGATCTTTTGTGTTGTGATGGATGCCCAAGGGCTTTTCACATAGATTGTGTTCCTCTTCCATGCATTCCCAGTGGTACTTGGTATTGTAAATACTGCCAGAATAATTTCCAGATGGAGAGTAATGTGCAACGTAATATGAATGCTGTCGCAGCTGGAAGGGTTGCAGGCGTTGATCCTTTAGAACAGATAAACCGAAGATGCATTCGCATTGTCAAAAGTGTAGCTGTCTTCCAGGGGGGATGTGCCTTGTGCGGATGTCACGATTTCACTAAACTATTTAGTCCTCGAACAGTAATGATTTGTGATCAGTGTGAGAGGGAATTTCATGTTGGGTGTTTGAAGGAGCATAACATGCAGGATTTACAGGAATTACCTGAAGGGGATTGGTTCTGCAGCACAAGTTGTAGTCATATTCATTCTTCTCTAGTGAATTTGGTTGCTTCTGGGGAGAATAGTCTCCCGGATTCTATTAtaagtttgataaaaaagaagcgTGACACTGGCGCTAAAGAGAACGGCACAGACACTGGTGCTGAAGAGAAGGGTGCTGACACTGGCGCTGAAGAGAAAGGTGCAGACTCTGTCGCCGAAGAGAAGGGTGCTGACACTGGCGCTGAAGAGAAAGTTGCTGACGATGGCGCTGAAGGGAAAGTTGCAGACACTGGCAATGAAGAGAAAGGCGGTGAAGAGAAAAATGTAGACACTGGCGGTGAAGAGAAAGGCACAGACACTGCTGTTGAAGAGAAAGGTGCAGACACTGGCATTGAAGAGAAAGTTGGAGACACTGGTGTTGGTCCTGAAATTAAATGGAGGGTTCTGAACTGGAAGTTAGTTGCGTCTGGTGAAAATAAGCAACTGGCTAATGAATATAGGCAAGTGCTTTCGAAGGCTGTTTCCATCTTCCATGAGCAATTTGATCCTATAGTTGATTCTTCTTCTGGCCGTGATTTCATTCCGACAATGCTGTTCGgAAAGAACATCCGTGGACAAGATTTTTCTGGAATGTACTGTGCAGTTCTCACTGTAAACCAAGTTGTTGTTTCTGCTGGAGTATTTCGTGTCTTTGGGCCAGAAATAGCAGAACTTCCGTTGGTGGCAACAGTTGCTGAGCACCAAGGACAGGGTTACTTTCAATGCCTGTTTTCTTGCATCGAGAGGCTACTTCAATCTTTAAATGTGAAAAACATTGTCCTACCGGCTGCTGAAGAAGCTAAATTTATATGGACTAACAAATTTGGGTTTACAAAGCTTGAGCACGATGAGATAAACAATTATAAGAGATTTTATCATATGATGGTTTTTCAAGGGACCTCAATACTACAGAAGCCTGTTTGTGCACTACCAAGTACTTCTAAGGAGGAAATTGTGTAA 3063 0.4101 MAKGTNSDEFMVLSRVRTGLKREFAFAMKAQSEIDGSLGRTRGGSKNRNEAPVQETPVGKKPRKTGLDDVGGVMSEEEAKSDVVDLVSDDEPRVLVSELESVKSVVETVIDDDETLLVDENLNEEKEKVVNEVEMEICETKEEQKDDETKDNVSVRKKKVILEKPMRRFTRSALKQKDEESKDNVVGMVDNVVNRETEILSGVITPTPMKLSKSGLKRFPVKLKDLLATGILEGLKVRYVKGQKARKPGEKDLPGVIKDAGVLCFCESCKGTNVVTPTVFELHAGSANKRPPEYTYLENGKPLRDVMNACCGFSLDKLDEAVQLVLGDFTMQQSNICFSCREPISESSNGVSKLVCNSCMELKEAQTSSQLQTAATGSKSIPQVVQPRSPEAVVVPESLNTGMAVPKSLKTETAVPNSLNTEMAVPESSNTQMIPKPLSTRMKQSASRGKSRGKITRKDLGLHKLVFEEDVLVNGTELAYYSHGKKLLVGEKQGYGIKCSCCDTEISASQFEAHAGWASRRKPYLHIYTSNGVSLHELSLSISKDRRFSASDNDDLCSICQDGGDLLCCDGCPRAFHIDCVPLPCIPSGTWYCKYCQNNFQMESNVQRNMNAVAAGRVAGVDPLEQINRRCIRIVKSVAVFQGGCALCGCHDFTKLFSPRTVMICDQCEREFHVGCLKEHNMQDLQELPEGDWFCSTSCSHIHSSLVNLVASGENSLPDSIISLIKKKRDTGAKENGTDTGAEEKGADTGAEEKGADSVAEEKGADTGAEEKVADDGAEGKVADTGNEEKGGEEKNVDTGGEEKGTDTAVEEKGADTGIEEKVGDTGVGPEIKWRVLNWKLVASGENKQLANEYRQVLSKAVSIFHEQFDPIVDSSSGRDFIPTMLFGKNIRGQDFSGMYCAVLTVNQVVVSAGVFRVFGPEIAELPLVATVAEHQGQGYFQCLFSCIERLLQSLNVKNIVLPAAEEAKFIWTNKFGFTKLEHDEINNYKRFYHMMVFQGTSILQKPVCALPSTSKEEIV 1020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04636 1020 Pfam PHD-finger 557 598 IPR019787 -
Tsu02g04636 1020 ProSiteProfiles Zinc finger PHD-type profile. 554 599 IPR019787 -
Tsu02g04636 1020 MobiDBLite consensus disorder prediction 729 820 - -
Tsu02g04636 1020 MobiDBLite consensus disorder prediction 35 70 - -
Tsu02g04636 1020 MobiDBLite consensus disorder prediction 424 446 - -
Tsu02g04636 1020 Pfam Tify domain binding domain 491 538 IPR032308 -
Tsu02g04636 1020 Pfam Tify domain binding domain 255 310 IPR032308 -
Tsu02g04636 1020 Gene3D - 836 1006 - -
Tsu02g04636 1020 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 549 616 IPR013083 -
Tsu02g04636 1020 ProSitePatterns Zinc finger PHD-type signature. 557 596 IPR019786 -
Tsu02g04636 1020 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 642 702 IPR013083 -
Tsu02g04636 1020 MobiDBLite consensus disorder prediction 424 454 - -
Tsu02g04636 1020 SMART PHD_3 556 597 IPR001965 -
Tsu02g04636 1020 SMART PHD_3 647 700 IPR001965 -
Tsu02g04636 1020 SUPERFAMILY FYVE/PHD zinc finger 543 597 IPR011011 -
Tsu02g04636 1020 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 892 982 IPR016181 -
Tsu02g04636 1020 PANTHER AUTOIMMUNE REGULATOR 1 1007 - -
Tsu02g04636 1020 PANTHER AUTOIMMUNE REGULATOR 1 1007 - -
Tsu02g04636 1020 MobiDBLite consensus disorder prediction 729 824 - -
Tsu02g04636 1020 SUPERFAMILY FYVE/PHD zinc finger 645 697 IPR011011 -
Tsu02g04636 1020 CDD PHD1_AIRE 556 596 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04636 Tsu-Chr2 55346919 55353737 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04636 216 730 PHD Transcription Factor Family AT2G36720 41.558 7.35e-133 425
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Tsu02g04636 TDBD 8.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04636 - - mtr:MTR_2g084425 1498.41