Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04633 ATGACTACACCTCCAAGCTTTGAAATTGGAAATCAAGGTATGCAAATGTTTCCTATGGTCACTGAAGATTTGATACCATTGCCAAATTCTATGGAAGGAATTTCAGGATCACCCTCTAATTCTCTCCTCTTCAATCTCTCTATTCTCaaagaaaaattcaatcaaGTGCAAAATCTTGTAGGTGTTATTCTCTCCCCAAATCAACAAGATTCATCAACTAATTCAATGGCTATATCCAACATGAATTCCACAATACAAGAAATCATAGTAACTGCCACATCAATCATGTTCAATTGCCAACACATGGCTCAAGGTAATAATTCTACTACATGCACAAACCAAGAATTTCAAAAGCAACAAACTaatattcaatcaaattttGGTAACAATAATACAAACATAGATCTTAGAGGTCAAAACTTATTTTCTAATAATGAGTCACAAGCATTGGATTGGTTTGGTGAAAGCTATAATAGTAACATTAATTATAGGCTCAAGCATGATATTGATGAGCAAAAGGTTGATCATGAAATTAGTGAAACCAATAATAGTATAAAGGGTTCTAATGAAGATATTTCAACAAAGAACGATTGTGATCGCGGTGATACAAGTCTAAAATTTGGGCCGTCTTATGCTCAGACTGGCCCAGAATGTGGTGATGATATAGTTGAATTGGACGCAACGGATTTATTAGCTAAATACACACATTATTGTCAAGTTTGTGGTAAAGGGTTTAAAAGGGATGCAAATTTAAGGATGCATATGAGAGCTCATGGTGATGAATACAAGAGTAGTGCAGCATTGAGCAATCCAATTAATAAGAGTAATAGTGATTATTTGATGAgtatgaaaaataagaaatattcaTGTCCTCAAGAAGGGTGTAGATGGAATCAAAAACATGCTAAGTTTCAACCATTGAAATCATTGATTTGTGCTAAGAATCATTACAAGAGAAGTCATTGTCCTAAAATGTATGTGTGCAAGAGATGTAATTTGAAGCAATTTTCTGTACTTTCTGATTTGAGGACACATGAGAAACATTGTGGTGATCTTAGGTGGCAATGCTCATGTGGCACTACATTTTCTAGGAAAGATAAGCTTATGGGGCATGTTGGTTTGTTTGTGGGACATCACCCAATTATCAATGGTTTGTCATATAGTACTCACACAAATTAG 1179 0.3359 MTTPPSFEIGNQGMQMFPMVTEDLIPLPNSMEGISGSPSNSLLFNLSILKEKFNQVQNLVGVILSPNQQDSSTNSMAISNMNSTIQEIIVTATSIMFNCQHMAQGNNSTTCTNQEFQKQQTNIQSNFGNNNTNIDLRGQNLFSNNESQALDWFGESYNSNINYRLKHDIDEQKVDHEISETNNSIKGSNEDISTKNDCDRGDTSLKFGPSYAQTGPECGDDIVELDATDLLAKYTHYCQVCGKGFKRDANLRMHMRAHGDEYKSSAALSNPINKSNSDYLMSMKNKKYSCPQEGCRWNQKHAKFQPLKSLICAKNHYKRSHCPKMYVCKRCNLKQFSVLSDLRTHEKHCGDLRWQCSCGTTFSRKDKLMGHVGLFVGHHPIINGLSYSTHTN 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04633 392 ProSitePatterns Zinc finger C2H2 type domain signature. 238 258 IPR013087 -
Tsu02g04633 392 ProSiteProfiles Zinc finger C2H2 type domain profile. 236 263 IPR013087 -
Tsu02g04633 392 SMART c2h2final6 326 348 IPR013087 -
Tsu02g04633 392 SMART c2h2final6 288 321 IPR013087 -
Tsu02g04633 392 SMART c2h2final6 236 258 IPR013087 -
Tsu02g04633 392 SUPERFAMILY beta-beta-alpha zinc fingers 234 260 IPR036236 -
Tsu02g04633 392 Gene3D Classic Zinc Finger 324 373 - -
Tsu02g04633 392 Pfam Zinc finger, C2H2 type 236 258 IPR013087 -
Tsu02g04633 392 Gene3D Classic Zinc Finger 222 294 - -
Tsu02g04633 392 PANTHER OS08G0562300 PROTEIN 11 388 - -
Tsu02g04633 392 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 11 388 IPR044300 GO:0010044|GO:0010447
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04633 Tsu-Chr2 55337402 55338580 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04633 39 380 C2H2 Transcription Factor Family AT5G22890 48.189 1.00e-108 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu02g04633 zf-C2H2 0.00016 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04633 - - gmx:100802769 433.721
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04633 02 55337402 55338580 Tsu02g04633 02 55337402 55338580 ECH