Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04632 ATGTTGTCTAAAATGGACATGGAAGGAATTATGAGCACAAAGGAACATGGTAATGATGCAAGTCATCTCATCAAAGGGAAGCGAACGAAACGGTTGAGGCAGTTGTCACCTTGCACCGTGGCAACTACCACGGTGACATCAAGTTGTTCGAGTGCCACTGGAGGTGGTGGATCTTTTTCATCCACCACTTTCGATGACACTGAACAAGAAGAGGAAGCAGATATGGCTAATTGTTTGATTCTCTTAGCCCAGGGAAGAACCGGAGAAGGAGGAGGTGGAGGAGGAGAGAATCAGTATCGCGGTGCTCAGGGCCACCACTATGATaacaaacatcaacaacaacaaatggACGGTTATAACAAGATAGCAACAACtgaaaaagcaacaaaaaacGGTTTTGAAAGTTATGAGTGTAAAACTTGTAACcgtttttttcattcatttcaagCGTTGGGTGGACATAGAGCAAGTCACAAGAAACCaaagatgaaagaagaaaaacaatctgCGCCTCCGCAGCCGCGACAAATAGCTACCACAACCGGcgaatttgaagaagaaaacaacCAAATTCACACCAAGAATGTCAATACTATCAATCCACTTGTTCCTCCGGTTTCGCTTGAATTAAGGTGTGGTGTTAATATTAATTTCAAGCCCAATAAGCTCAATAAGATTCATGAATGTTCGATTTGCGGCGCGGAATTCACATCAGGTCAAGCATTGGGTGGTCACATGAGGAGACATAGAGCTTCCATTGATAAAAGTAACAGCAAAAACAACAACGTTGTTGCTTTTGAAGGTGTTCATGTTAAGTCTAGAAATATTCTAGAATTGGATCTTAATTTTCCGGCACCGGAAGAAGATCTCTCGGATTCGACGTTTCAGTTTCCGGCGATGGTAGGGTGCCATTATTAG 918 0.3878 MLSKMDMEGIMSTKEHGNDASHLIKGKRTKRLRQLSPCTVATTTVTSSCSSATGGGGSFSSTTFDDTEQEEEADMANCLILLAQGRTGEGGGGGGENQYRGAQGHHYDNKHQQQQMDGYNKIATTEKATKNGFESYECKTCNRFFHSFQALGGHRASHKKPKMKEEKQSAPPQPRQIATTTGEFEEENNQIHTKNVNTINPLVPPVSLELRCGVNINFKPNKLNKIHECSICGAEFTSGQALGGHMRRHRASIDKSNSKNNNVVAFEGVHVKSRNILELDLNFPAPEEDLSDSTFQFPAMVGCHY 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04632 305 SMART c2h2final6 227 249 IPR013087 -
Tsu02g04632 305 SMART c2h2final6 136 158 IPR013087 -
Tsu02g04632 305 MobiDBLite consensus disorder prediction 154 176 - -
Tsu02g04632 305 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 300 - -
Tsu02g04632 305 ProSiteProfiles Zinc finger C2H2 type domain profile. 136 163 IPR013087 -
Tsu02g04632 305 PANTHER ZINC FINGER PROTEIN ZAT5 1 300 - -
Tsu02g04632 305 ProSitePatterns Zinc finger C2H2 type domain signature. 138 158 IPR013087 -
Tsu02g04632 305 Gene3D Classic Zinc Finger 214 274 - -
Tsu02g04632 305 ProSitePatterns Zinc finger C2H2 type domain signature. 229 249 IPR013087 -
Tsu02g04632 305 Pfam C2H2-type zinc finger 227 251 - -
Tsu02g04632 305 Pfam C2H2-type zinc finger 136 161 - -
Tsu02g04632 305 ProSiteProfiles Zinc finger C2H2 type domain profile. 227 254 IPR013087 -
Tsu02g04632 305 SUPERFAMILY beta-beta-alpha zinc fingers 135 249 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04632 Tsu-Chr2 55326999 55328017 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04632 10 305 C2H2 Transcription Factor Family AT2G28200 36.667 7.05e-49 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu02g04632 zf-C2H2_6 1.6e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04632 - - gmx:100794834 238.424
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04632 02 55326999 55328017 Tsu02g04632 02 55326999 55328017 ECH
Tsu02g04632 02 55326999 55328017 Tsu01g03947 01 47084248 47085349 ECH
Tsu02g04632 02 55326999 55328017 Tsu01g02333 01 25041396 25042325 ECH
Tsu02g04632 02 55326999 55328017 Tsu02g03676 02 41378128 41379152 ECH
Tsu01g02333 01 25041396 25042325 Tsu02g04632 02 55326999 55328017 ECH
Tsu02g04632 02 55326999 55328017 Tsu02g03676 02 41378128 41379152 PCT