Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04629 ATGGATGTTAACCAAGACTCATTAGTATACACCAATAATTTTGAGCTTCATGACTTCATTGATGATCCAAACTTTGATCAATTTATAGATTTAATTCGAGGTGAGAATGAAGATGTAATAGGTAACTTTGGTTCTGACCTTATCAATGATtgttttgttgataataatCATCCTCAGCTTCTTTCAATTCCTCCAAACCCATTAATATTTGATCACAACAGCAACAACTATAGTAATAATATTGTGAATGTGTATGATCCAAGTTCTAGCACAATTGGCTCCTTCTCTTGTTATGGTGGGGAGGTTAAGGGAGAAGGAGAAAATGATGGAGACGATTCTTCGGCAACAACAATCACAAAGACCACAATTGATGATGCCACACCTAGGGTTAAAACCGATAGGTCTAAGACACTCATATCTGAGAGGAGAAGGAGAGGTCGGATGAAGGATAAGCTTTATGCGTTGCGTTCTTTGGTTCCCAACATTACAAAGATGGATAAGGCCTCTATAATTGGAGATGCAGTATCATATGTGCATGACCTTCAAGCACAATCTAGGAAATTGAAGGCTGAGGTTTCAGGACTTGAAGCATCCTTATTAGTGTCTGAAAATTATCAAGGATCAATTAACAACACCATTAATACTCAAAGCCATCCCATTTGCAAGAAAATTATCCAGGTGGAAATGTTCCAAGTGGAGGAAAGAGGATATTATGCAAAAATATTGTGTAATAAAGGAGAAGGAGTAGCTGCTTCATTGTATAAGGCTATTGAATCTCTTGAAAATTTCaatgttcaaaattcaaacttggCTACGGTTTGTGACAATTTTCTACTTACATTTACATTGAAtGTAAAAGGTTGTGAACAAGAAATGAACCTTCAAAATTTGAAGCTATGGGTGGCTGGTGCTCTTTTGAACCAAGGTTTTGAATTCATGCCATCCTTTTGA 951 0.3544 MDVNQDSLVYTNNFELHDFIDDPNFDQFIDLIRGENEDVIGNFGSDLINDCFVDNNHPQLLSIPPNPLIFDHNSNNYSNNIVNVYDPSSSTIGSFSCYGGEVKGEGENDGDDSSATTITKTTIDDATPRVKTDRSKTLISERRRRGRMKDKLYALRSLVPNITKMDKASIIGDAVSYVHDLQAQSRKLKAEVSGLEASLLVSENYQGSINNTINTQSHPICKKIIQVEMFQVEERGYYAKILCNKGEGVAASLYKAIESLENFNVQNSNLATVCDNFLLTFTLNVKGCEQEMNLQNLKLWVAGALLNQGFEFMPSF 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04629 316 Gene3D - 124 198 IPR036638 GO:0046983
Tsu02g04629 316 Pfam Helix-loop-helix DNA-binding domain 139 182 IPR011598 GO:0046983
Tsu02g04629 316 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 132 181 IPR011598 GO:0046983
Tsu02g04629 316 Coils Coil 178 198 - -
Tsu02g04629 316 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 133 207 IPR036638 GO:0046983
Tsu02g04629 316 SMART finulus 138 187 IPR011598 GO:0046983
Tsu02g04629 316 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 10 313 - -
Tsu02g04629 316 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 10 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04629 Tsu-Chr2 55295505 55297380 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04629 1 310 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 52.174 9.67e-99 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu02g04629 HLH 1.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04629 - - gmx:100805451 443.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04629 02 55295505 55297380 Tsu02g04629 02 55295505 55297380 ECH
Tsu02g04629 02 55295505 55297380 Tsu02g03674 02 41354563 41356460 PCT