Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04619 ATGTCACAATCCATGGCGTTATCTCCATCCTTATCAGaaggaaagaagaagaagaaacacaccaaagaagaacaacaacaaacggaggaacaacaaaacaaacaagattTCATGATTAAACCAGAAAAAATTTCACCAACAATCGACACATCAAATTGGCCTATTCTCTTGAAAAACTACGACCGTCTCAATGTTCGTACCGGTCACTACACACCACTTCCCGCCGGTCATTCACCGCTCAAGCGGCCACTTGCTGATTATCTCAAATATGGTGTGATGAATCTTGATAAGCCTGCAAATCCATCTTCTCATGAAGTTGTTGCTTGGATAAAGCGTATTCTTCGTGTCGAGAAAACCGGTCACAGCGGTACATTGGATCCTAAAGTTACTGGTAATTTAATTGTTTGTATTGATAGAGCAACACGACTTGTTAAATCTCAACAAGGTGCTGGTAAAGAGTATGTTTGTATTGCTCGTCTTCATTCAGCTGTTCCTGATGTTTCTAAGGTAGCTCGTGCTCTTGAAACATTAACTGGTGCTGTTTTTCAAAGACCACCTTTGATTTCTGCTGTTAAAAGACAACTTAGGATTAGAACTATTTATGAAAGTAAAATGCTTGAATATGATGCTGAAAGACATTTAGTTGTTTTTTGGATTTCGTGTGAGGCGGGTACTTATGTTAGGACTATGTGTGTTCATTTGGGTTTAATTCTTGGTGTTGGTGGTCATATGCAAGAGCTTAGGAGGGTTAGGTCAGGGATTATGGGTGAGAAAGATAATATGGTTTCTATGCATGATGTTATGGATGCTCAATGGGTTTACGATAATTATCGCGATGAGAGTTATTTGAGGAGGGTTGTTATGCCTTTAGAGGTTCTTTTGACTAGTTATAAGAGATTAGTTGTTAAGGATTCGGCTGTTAATGCCATTTGTTATGGTGCTAAGTTGATGATTCCGGGGTTGCTTAGGTTTGAGAATGATATTGAAGCTGGTGAGGAGGTTGTTCTTATGACTACTAAGGGTGAAGCTATTGCCCTTGGGATTGCTGAGATGACTACGGCTGTTATGGCTACTTGTGATCATGGTGTTGTTGCTAAGATTAAGAGGGTTGTTATGGATCGTGATACTTATCCGAGGAAATGGGGTTTGGGTCCTAGGGCTTCTATGAAGAAGAAGCTGATTGCTCAAGGGAAGTTGGATAAACATGGGAAGCCAAATGAGAGTACTCCTCAAGAGTGGATGAGGAATGTTGTTTTGCCTACCGGTGGGGATAGTGTTATTGCTGGAATGGCGGCTGCTACTGAAGATGTGAAGAAAGAGGTTGCTGATGAAGATGGCGAGAAGGTTAAGAAGGATGGTGATGGTGAAGGGCGTAAAAGGAAGAAACATGAATCTGTCGATAGTCCTGCTCCTGCTAAGAAGTCTAaagttgatgatgaagaaaaggTGAAGACCAAGAAAGTAGATGAAGTGGCTGTGGAGGTTGAAGGTGAGAAGACagacaagaagaagaagaaaaagaagaaggataaAGAGAATGGTGACGTAGCATCTTCTGATGAGGACAAGtctgagaagaagaaaaagaagcaaaagGATGAAGTTGGTTCTCCTGAAGTTGAGAAGtctgagaagaagaaaaagaagcaaaagGAAAAGAGCGAAGATGGTTCCCCTGAAGTTGATAAAtctgagaagaaaaagaagaagaaagacaaaGAAGCTAAAGATAATGCTGCAGAGATAAGTAATGGAAAGGATGAAAGCAATGCTGAAAAGAGTGAAAAGAAgcacaagaaaaagaaaaacaaagatgcTCAAGAAGAATAA 1830 0.3585 MSQSMALSPSLSEGKKKKKHTKEEQQQTEEQQNKQDFMIKPEKISPTIDTSNWPILLKNYDRLNVRTGHYTPLPAGHSPLKRPLADYLKYGVMNLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKMLEYDAERHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSGIMGEKDNMVSMHDVMDAQWVYDNYRDESYLRRVVMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEAGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIAQGKLDKHGKPNESTPQEWMRNVVLPTGGDSVIAGMAAATEDVKKEVADEDGEKVKKDGDGEGRKRKKHESVDSPAPAKKSKVDDEEKVKTKKVDEVAVEVEGEKTDKKKKKKKKDKENGDVASSDEDKSEKKKKKQKDEVGSPEVEKSEKKKKKQKEKSEDGSPEVDKSEKKKKKKDKEAKDNAAEISNGKDESNAEKSEKKHKKKKNKDAQEE 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04619 609 MobiDBLite consensus disorder prediction 1 40 - -
Tsu02g04619 609 Gene3D Pseudouridine synthase 83 289 - -
Tsu02g04619 609 Gene3D PUA domain 50 381 IPR036974 GO:0003723
Tsu02g04619 609 TIGRFAM unchar_dom_2: uncharacterized domain 2 293 369 IPR004521 GO:0003723
Tsu02g04619 609 Coils Coil 589 609 - -
Tsu02g04619 609 Pfam tRNA pseudouridylate synthase B C-terminal domain 228 294 IPR032819 -
Tsu02g04619 609 Pfam TruB family pseudouridylate synthase (N terminal domain) 111 227 IPR002501 GO:0006396
Tsu02g04619 609 Coils Coil 11 31 - -
Tsu02g04619 609 SUPERFAMILY PUA domain-like 297 378 IPR015947 -
Tsu02g04619 609 PANTHER CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 15 532 IPR004802 GO:0006396
Tsu02g04619 609 TIGRFAM CBF5: putative rRNA pseudouridine synthase 57 382 IPR004802 GO:0006396
Tsu02g04619 609 SMART pua_5 298 372 IPR002478 GO:0003723
Tsu02g04619 609 MobiDBLite consensus disorder prediction 12 30 - -
Tsu02g04619 609 ProSiteProfiles PUA domain profile. 297 372 - -
Tsu02g04619 609 MobiDBLite consensus disorder prediction 437 609 - -
Tsu02g04619 609 Pfam DKCLD (NUC011) domain 50 107 IPR012960 -
Tsu02g04619 609 CDD PseudoU_synth_hDyskerin 89 271 - -
Tsu02g04619 609 SMART DKCLD_2 49 107 IPR012960 -
Tsu02g04619 609 Pfam PUA domain 298 370 IPR002478 GO:0003723
Tsu02g04619 609 SUPERFAMILY Pseudouridine synthase 50 295 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04619 Tsu-Chr2 55191580 55193731 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04619 11 476 NAC Transcription Factor Family AT3G57150 81.876 0.0 750
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04619 K11131 - gmx:100806355 803.897