Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04586 ATGTACAAACGTAGATTCAACACCAAACCGGTGTATGTCGCTGACCCAGATGAGCACGAGCTTGAGCCTAAGCCCGAGCTCATCTCAGAAGCTGGGCCAGCTTCCCCTTCTTCTTGTGAAGACACAAAAATTGAAGAACCATCACCCAAGAAAagGAGGGAGATGAAGAAAAGAGTAGTTACTATACCGATCGGTGACGTGGAAGGATCTAAGAGCAAAGGAGAGACATTTCCACCGTCGGATTCATGGGCTTGGAGAAAGTACGGTCAAAAGCCCATTAAAGGCTCCCCTTATCCAAGGGGATATTACCGATGTAGTAGTTCAAAAGGATGTCCCGCTAGAAAACAAGTTGAAAGAAACCGTGTGGACCCCACCAACCTCCTTGTAACCTACGCCTATGATCACAACCACTCCCTCCCTCCCGCCAAATCTCATTCCTCTTCCGCCGCCGTAACCGCCACCGTAACAACCACCGTCGACTCTCCCGGCGATGACTCTTCCGGTGAATGCACCGCCGCTACTCCTCCACAACCAGACAATCCAACCGTTTTCACCGCTCATCCTGATTTCGACTTCGCCGGCGAACACCACGCCATGTTTGGATGGTTCGACGACGTAGCTTCCACCGGCGTTCTCGTAAGTCCGATCTGCGGCGGAGTTGAAGATGTGACGCTAACAAttagggaagaagatgaatcgCTTTTCGCCGATCTCGGTGAGTTACCGGAATGTTCAACGGTTTTCCGGCAGAGGAATATTCCGAGTACGATTCAGTGTAGTGGCATCACAGGATAA 795 0.4969 MYKRRFNTKPVYVADPDEHELEPKPELISEAGPASPSSCEDTKIEEPSPKKRREMKKRVVTIPIGDVEGSKSKGETFPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERNRVDPTNLLVTYAYDHNHSLPPAKSHSSSAAVTATVTTTVDSPGDDSSGECTAATPPQPDNPTVFTAHPDFDFAGEHHAMFGWFDDVASTGVLVSPICGGVEDVTLTIREEDESLFADLGELPECSTVFRQRNIPSTIQCSGITG 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04586 264 SUPERFAMILY WRKY DNA-binding domain 75 140 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu02g04586 264 SMART WRKY_cls 79 139 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu02g04586 264 MobiDBLite consensus disorder prediction 10 26 - -
Tsu02g04586 264 MobiDBLite consensus disorder prediction 43 61 - -
Tsu02g04586 264 PANTHER OS01G0750100 PROTEIN 27 257 - -
Tsu02g04586 264 Gene3D WRKY domain 67 141 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu02g04586 264 Pfam WRKY DNA -binding domain 81 137 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu02g04586 264 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 27 257 IPR044810 GO:0003700
Tsu02g04586 264 MobiDBLite consensus disorder prediction 140 180 - -
Tsu02g04586 264 MobiDBLite consensus disorder prediction 1 82 - -
Tsu02g04586 264 ProSiteProfiles WRKY domain profile. 80 140 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu02g04586 264 MobiDBLite consensus disorder prediction 139 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04586 Tsu-Chr2 54843512 54847001 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04586 26 258 WRKY Transcription Factor Family AT3G58710 51.406 3.40e-75 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Tsu02g04586 WRKY 8.5e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04586 - - cam:101504205 416.772