Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04584 ATGGATTCAAACACAAACATTTCAGATACTTTACACTCATTGAGGTCCTTTGTCCTGCAACCGTTTCGTGCCATGTATAGTCGTTTATCGATTTCCAATTTGAGGCAAGAAGTTGAAGCTTCCAATTCCTCCATGGACTATAATAACTATCAAAGCTATAAATACGACGTGTTCATCAGTTTTAGAGGTCCTGACACCCGCAACAGTTTTGTTGATCATCTTTATGATCATCTAGCAAGAAAAGGTATCTTCACCTTCAAGGATGACGAAAGGCTTGAGAAAGGAGAATCCCTTTCGCCACAACTTCTACAAGCAATTCAAAACTCACAGATTTGTATTGTTGTCTTCTCGGAAAGATATGCCGAGTCAACATGGTGTTTGGAAGAGATGGCTACTATTGCTGAATGTCGTGAACCATTCAAACAAACAGTTTTCCCTGTTTTTTATGATGTCGATCCATCTCATGTACGAAAACAGAATGGGGTATACCAGAATGACTTTATTTTACACAAGAAGGAATTCAAACATGACCCAAATAAGGTTATTAGATGGGCGAGAGCTATGGCCGATTTAGCTGAACTAGTCGGTTGGGATGTTAGGAACAAgCCAGAGTTTCGAGAAATCCAAATTATTGTTCAGGAGGTGATAAAAACACTGGGTCATAAATTTTCAGGGTTTGCGGATGACCTTATTGGGATAAAACCTCGAGTAGAAGcagtaaaaagtcttttgaaattaaGCTCAGAGGATGATGAATTTCGAGTTGTTGGTATTTTGGGGATGGCTGGAATCGGAAAAACAACTATTGCGTCTGTCTTGTATGACAAAATATCCTCTCAGTTTGATGCAAGCTGTTTTATTGAGAATGTAAGCAAAATTTATCGAGATGGTGATGCTATTGCTGTACAGAAACAAATCCTTCGGCAAACCGTAGATGAAATAAATCTAGATACATACAGCCCTTCTGAAATATCTGGAATTGTACGTAAAAGAATGTGCAACAGAAAGTTTCTTGTAGTTCTTGACAATGTTGATATATTAGAGCAAGTGGAAGAATTGGCTATAAATCCCAGATTGCTTGGTACAGGAAGTAGAATGATCATTACAACTAGGAATGCACATATTCTAAGGGTGTATGAAGAACAGTTATCTTTATCTCATGATAGATGCGTGTCATATGAAGTTCCACTATTGAATAACAATGAGGCTTGCAAACTTTTTTATAGAAAAGCTTCCAAACGCAAGGATCTCACTAGCGAATGTGTGAAGCTTACTAATGAGGTACTAAAATATGCTCAAGGTCTTCCATTAGCAGTTCGAATAGTGGGTTCTTTCTTGTGTACTCGAAATGTTAACCAGTGGGGAGATGCCATGCATAGATTGAGAAATAATCCAGATAACAAAGTTATGGATGTGCTTAAGGTAAGTCTTGAGGGATTACATTCAAATGACAAAGAAATGTTTCTGCATATTGCATGTTTCTTTAAAGGGGAGAAGGAAGATTATGTGAAACGAATTCTAGATGCTTGTGGTTTGCATCCTCATTTTGGAATTCAAAATTTGATCGAGAGGTCACTCATAACTATTAGAAATCAGAAAATTCATATGCATGAAATGTTGCAAGAATTGGGGAAGAAAATTGTTCGGCAACAGTTTCTTGATGAACCGGGATCTTGGAGTAGATTGTGGCTTTATGATGATTTCTTCCATGTCATGATGACAGAAACGgGAACAAACAAGGTTAAAGCCATCATTCTGGATCAAAAAGAGCATATCTCTGAATATCCTCTGTTGAGGGCTGAAGGATTGTCAATAATGAGGGGACTTAAAATTCTTATACTATACCATGAGAAATTTTCAGGAAGTCTCAATTTTCTTTCTAACAGATTGCAGTATCTTCTGTGGTATGGTTACCCTTTTGCTTCTTTGCCATTAAGTTTTGAGCCGTTTTGCCTCGTTGAATTGAATATGCCTTGTAGCAGTATTCAACGACTATGGGACGGTCAGAAGTATCTCCCATTATTGAAAAGGGTGGATCTGAGCAACTCCAAATATCTTGTGGAGTCTCCAAATTTTGCTGGAAGCCCGAGACTTGAGCGGCTAGATCTTACAGGATGCATAAACCTATCGTATGTCCATCCATCCATTGGACTGCTGGTAAAACTTTCTTTCTTGAGTTTGGAAGGCTGCAGCAGTATGGTCAGGCTAGTTCTTGATGGTGACACTATATCTAACTTATATTCTCTCAAAGTTCTACACCTCTCTGGCTGCCCGAAACTCGAAATGGTACCAGATTTTACTGGGGTCTCAAATCTTGAGTATCTTGATATTGATCAATGTACGAGCTTATCAACGATCGATCAATCTATTGGGGATCTTACACAACTTAAATTCTTGAGTTTAAGAGACTGTACGAATCTTGTTAGTATACCAGAAAGCATTAATTCTTTGACTTCTCTTGTTACTCTAGATTTATGTGGCTGCTTAAAACTAGAGAATCTACCCTTGCTGGAAAACCTACCAGTGTCTGAAGAAAGTATTGACTTCATATCAGTGTCTTCCGTAAATGTTGATCTCTCCAATGGTAAACTTGTATCACCTTACTGTCTGGactctttgatttttttggacCTAAGCTTTTGCAATCTAAGTATACTCCCTGATGCTATTGTAAAGTTATGGCAGTTAGAAAGGCTAAATCTTGAAGGAAACAACTTTGTTTCACTAACATCATCAATAGGGAGGCTTTCTAGTCTAGCATTCTTAAACTTGGCACATTGCAGTAAGCTTCAATCTTTGCCGGAGCTCCGATTCTGTGCAACTTCTTCATCTGGGGGAAGGTATTTCAAAATGGTATCCGGATCTTATAATCATAGATCAGGATTATATATTTTCCACTGTCCCCTCTTGGAGATCACAGAAGGTCAAAACTTGGCACTTTCGTGGCTGGTGAAGTTAATTAAGAATCCTTGTCATTTCCGGTGTGGCCTTGATATTGTTGTACCTGGGTACACAGTTCCACATTGGTTTTATCATCAATTTACAGAAAATTCAAGACTACGGATTACAGACTATATGACTGAGTTTGACGATTGGCTTGGCTTTGCCTTTTGTGTGGCATTTGTTGAAAACTGCCGTCCAACAACATCCGGTTATCctctttatctttcttttgtAAGTGAACAAACTGAAGAAACCTTTGATATACCAATTCGGTTAGACCTGAACGATGTTGATGACTCACACGCAGATCATTTATGGCTAATCTATATATCTAGGCCCCACTGCCATTTTGTAACAACGGGAGCACAAATCACATTTAAAGCTCACCCAGGTTTGGTAATAAAACAATGGGGATTGCGCATGGTTATGAAGCATGATATCGATGACTATAGTCCATTTGATTCGTGGACAAATGGAGTTCATAAACAAGACTATCTTGGCTTGAATCATGTACATGAATGCAGCAGTAGCAGCAGGCCTCAAATCCAGCTTCCTTATAATTGGTGTGTAGCTGAGGAAGAGATAAAGCCTAAAATCCAGCTTCGATATAATTGGCATGTTACTGAGGAAGAGGAAAACGAGAATAGGGAAGTGAATGTGAAACAAAGTCATCTATCAGATATGGGCCTTACCACATAG 3642 0.3806 MDSNTNISDTLHSLRSFVLQPFRAMYSRLSISNLRQEVEASNSSMDYNNYQSYKYDVFISFRGPDTRNSFVDHLYDHLARKGIFTFKDDERLEKGESLSPQLLQAIQNSQICIVVFSERYAESTWCLEEMATIAECREPFKQTVFPVFYDVDPSHVRKQNGVYQNDFILHKKEFKHDPNKVIRWARAMADLAELVGWDVRNKPEFREIQIIVQEVIKTLGHKFSGFADDLIGIKPRVEAVKSLLKLSSEDDEFRVVGILGMAGIGKTTIASVLYDKISSQFDASCFIENVSKIYRDGDAIAVQKQILRQTVDEINLDTYSPSEISGIVRKRMCNRKFLVVLDNVDILEQVEELAINPRLLGTGSRMIITTRNAHILRVYEEQLSLSHDRCVSYEVPLLNNNEACKLFYRKASKRKDLTSECVKLTNEVLKYAQGLPLAVRIVGSFLCTRNVNQWGDAMHRLRNNPDNKVMDVLKVSLEGLHSNDKEMFLHIACFFKGEKEDYVKRILDACGLHPHFGIQNLIERSLITIRNQKIHMHEMLQELGKKIVRQQFLDEPGSWSRLWLYDDFFHVMMTETGTNKVKAIILDQKEHISEYPLLRAEGLSIMRGLKILILYHEKFSGSLNFLSNRLQYLLWYGYPFASLPLSFEPFCLVELNMPCSSIQRLWDGQKYLPLLKRVDLSNSKYLVESPNFAGSPRLERLDLTGCINLSYVHPSIGLLVKLSFLSLEGCSSMVRLVLDGDTISNLYSLKVLHLSGCPKLEMVPDFTGVSNLEYLDIDQCTSLSTIDQSIGDLTQLKFLSLRDCTNLVSIPESINSLTSLVTLDLCGCLKLENLPLLENLPVSEESIDFISVSSVNVDLSNGKLVSPYCLDSLIFLDLSFCNLSILPDAIVKLWQLERLNLEGNNFVSLTSSIGRLSSLAFLNLAHCSKLQSLPELRFCATSSSGGRYFKMVSGSYNHRSGLYIFHCPLLEITEGQNLALSWLVKLIKNPCHFRCGLDIVVPGYTVPHWFYHQFTENSRLRITDYMTEFDDWLGFAFCVAFVENCRPTTSGYPLYLSFVSEQTEETFDIPIRLDLNDVDDSHADHLWLIYISRPHCHFVTTGAQITFKAHPGLVIKQWGLRMVMKHDIDDYSPFDSWTNGVHKQDYLGLNHVHECSSSSRPQIQLPYNWCVAEEEIKPKIQLRYNWHVTEEEENENREVNVKQSHLSDMGLTT 1213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04584 1213 SUPERFAMILY "Winged helix" DNA-binding domain 467 571 IPR036390 -
Tsu02g04584 1213 Pfam Leucine Rich Repeat 651 669 IPR011713 -
Tsu02g04584 1213 MobiDBLite consensus disorder prediction 1193 1213 - -
Tsu02g04584 1213 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 763 848 IPR044974 GO:0006952
Tsu02g04584 1213 SMART till_3 54 194 IPR000157 GO:0007165
Tsu02g04584 1213 ProSiteProfiles TIR domain profile. 53 219 IPR000157 GO:0007165
Tsu02g04584 1213 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 871 1130 IPR044974 GO:0006952
Tsu02g04584 1213 Gene3D - 49 224 IPR035897 -
Tsu02g04584 1213 Pfam C-JID domain 1001 1128 IPR045344 -
Tsu02g04584 1213 Gene3D Ribonuclease Inhibitor 741 850 IPR032675 -
Tsu02g04584 1213 Gene3D Ribonuclease Inhibitor 851 982 IPR032675 -
Tsu02g04584 1213 Pfam TIR domain 54 219 IPR000157 GO:0007165
Tsu02g04584 1213 SUPERFAMILY L domain-like 603 988 - -
Tsu02g04584 1213 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 871 1130 - -
Tsu02g04584 1213 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 763 848 - -
Tsu02g04584 1213 SUPERFAMILY Toll/Interleukin receptor TIR domain 48 197 IPR035897 -
Tsu02g04584 1213 Gene3D - 397 481 IPR042197 -
Tsu02g04584 1213 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 227 761 IPR044974 GO:0006952
Tsu02g04584 1213 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 227 761 - -
Tsu02g04584 1213 Pfam NB-ARC domain 238 467 IPR002182 GO:0043531
Tsu02g04584 1213 Gene3D Ribonuclease Inhibitor 565 738 IPR032675 -
Tsu02g04584 1213 PRINTS Disease resistance protein signature 432 446 - -
Tsu02g04584 1213 PRINTS Disease resistance protein signature 255 270 - -
Tsu02g04584 1213 PRINTS Disease resistance protein signature 331 345 - -
Tsu02g04584 1213 PRINTS Disease resistance protein signature 744 760 - -
Tsu02g04584 1213 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 227 491 IPR027417 -
Tsu02g04584 1213 Gene3D - 227 385 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04584 Tsu-Chr2 54820447 54825633 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04584 742 919 WRKY Transcription Factor Family AT4G12020 32.323 1.33e-11 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04584 - - mtr:MTR_2g083520 1820.44