Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04583 ATGGCTTCTTCAAGTAGCAACAACTCTTCCTCTTCTCGAATCTGTAAATACGACGTGTTTCTCAGTTTCCGAGGCCCTGACACACGCAACAAATTCATCGATCATCTCTACAATCATCTCATCAAGAAAGGCATCTTCGTTTACAAAGACGATAAAACTCTCCAAAAAGGAGAATTCATTTCATCGCAGCTTCTAGAAGCAATTCGAGATTCAAGGGTTTCAATAGTTGTGTTTTCAAAAACTTATACTGGGTCGTCATGGTGTTTGGATGAAATGGTTGCTATTTCCGAATGTCGCAGAGAATTGAATCGAACTGTTATTCCAGTTTTCTATGATGTTGATCCTTCTCATGTTCGAAAGCAGATTAATCGAAGGCAGGAGATTAATCGAAGGCAGGAAGCTATTACTAAGAAGTTGAAATATGATCCAGATAAGGCTAATCGATGGCAGGAAGCTATGACTGAATTGGCCAATTTAGTTGGATTTGATCTAAGAGACAAGCCAGAGTTTACAGAGATTGAAAAAATTGTTCAAGCAGTGATAAAAACGTTGGGTCATAAATTCTCAGGGTTTGCCAATGATCTCGTTGGAATGCAACCTCGCATAGAAGAATTAGAAAAGCTTCTAAAGTTGACCTCAGAGGATGTTGAATTTCGAGTTCTGGGAATTTGGGGGATGGGTGGAGTAGGAAAGACAACACATGCTACTGTTTTGTATGACAGAATCTCTTATCAGTTTGATGTGCGTTGTTTTATTAATAACACAAGCAAAATTTATATGGATGGTGGCGTTGTTGCTGTACAAAAACAAATCCTTCGTCAAACTCTAGATGAAAGAAATCTAGATTCATATGATACTTGTGAAATAGCCGGGATTATGATAAATAGGCTTCAAAGTGGCATTAAGGTCCTTCTGGTTCTTGATAATGTTGATCAATTAGAGCAATTGCAGGAATTGGCCATAAATCCTAAATTGCTTTGGCGAGGTAGTAGAATAATCATAACCACAAGGGATGAGCATATTCTAAGAGTATATGGGGCAGATACAGTACATGAAGTTTCAATGTTGAATAGTAATGATGCCTGTGAACTTTTTTGTAGAAAAGCCTTCAAAGGTGAAGAGCGAAGCACAAATTGTGTTGAGTTGATTCCAGAGGTACTAAAATATGCTCAACATCTTCCATTGGCCATTAGAGTAGTGGGTTCTTTCTTGTGTACCCGAGACGCTACTCAGTGGAGAGATGCTTTGGATAGATTGAGGATTAATCCAAACAGTAAAATTATGGATGTGCTTCAGATGAGTGTTGATGGACTACAACATGAGGAGAAGGAAATATTTCTGCACATTGCTTGTTTCTTTAAAGGGGAGAGGGAAGATTATGTAAAGCGAATTCTAGATGCTTGTGGATTACACCCTCATATTGGAATTCAAAGAATCCTTGAGAAATCACTCATTACCATTAAAAACCAGGAGATTCATATGCATGATATGTTACAAAAATTGGGGAAGAAAATCGTTCGGCACCAATTTCCCGAAGATCCAGGATCGTGGAGTAGATTATGGCAATACCATGATTTCTATCAGGTTTTAACGACAGAAACGGGAACAAACAATATTAAAGCTATAGTTCTGGATCAAAAGGAAAATTTCTCCAAATGCATGGCTGAAGGATTTTCTAATATGAGGAACCTTGGACTTCTCATATTGTATCATAACAATTTTTTAGGAAATCTCAATTTTCTTTCCAACAATCTGCGATATCTTTTGTGGCATGGATACCCTTTTACTTCTTTGCCACCAAATTTTGAGCCATGTTATCTCGTGGAATTGAATATGCCTGATAGTAGCATTCAACGATTGTGGGAAGGTCGCAAGGATCTCCCTTATTTGAGAAGTATGGATGTGAGCAACTCCAAGTATCTTACAGAGACTCCAAAGTTTTTTTGGACCCCAAAACTTGAGCGGCTAGATTTTACTGGATGCACAAACTTAACACAGGTCCATCCATCAATTGGACATCTTACAGAACTTGTCTTCTTAAGTTTTCAAAACTGCAGCAGTTTGGTCAACCTCGATTTTGGTAGAGtatcaaatttaaattctttGCGAGTTCTACGCCTCTCTGGTTGCACAAAACTTCAAAAGACGCCAGAATTTACAGGGGCATCAAATCTTGAGTACCTTGATATGGATGGATGCATAAGTTTAACCACAGTCCATGAATCCATTGGGGTTCTTGCAAAGCTTAGATTCTTGAGTTTGAGGGATTGCATAATTCTTGCTGGAATGCCCAATAGCATTAATACCATGACTTCTCTTGTAACTCTAGATTTATGTGGCTGCTTGAAACTTACAACTCTGCCCCTTGGACGGAATCTCAGTTCTTCTCATATGGaatctttgatttttcttgATGTAAGCTTTTGCAATCTTCATGAATTACCTAATCCTATTTGCGAGCTACAATGTTTAGAAAGACTAAGTCTACAAGGAAACAATTTTACGTCACTACCTTCTAATCTTTGTATGCTTGGAAGTCTGGCATATTTGAACTTGGCTCATTGCCATAAGCTGCAAACTTTTCcacatatattttcaaaaaaaaaatcgtctCTAGTGGGAAGTTATTTTAAAGTAGCATCGGGATCGCGTAATCATAGGTCAGGATTACATATTTTTGACTGCCCCAAATTGAAGTTCTCCCTACTGGATAACCATGAATATTTTAGCAACCTTCTTTGTAAATGGTTAGAAAGACTTCTTAAGGAACCCCGCCACTTTCGGTGTGGCTTTGACATTATTGTTCCTTGGAATTGGAAAAATATTGATGCTCAATTAACTGATCATATTCCAGAGTGGTTCCATCACCAATTTAGAGGGCATTCAATTATAAGGATAGGAAAATCTAATGTTGATGACAACTGGGTTGGCTTTTCCTTCTGTGTAGTATTTGAGGTAAACAACCGTCTTGCATATTATGGTTCATCACATGGTTCAACGTCTTCTGCACTGCCACATcctttttatctttcttttgaaAGTGAACACACAGAAGAACGCTTCGATATGCCACTTAATTTGGAACTGGAGAAAATTGATGGATCAAAACATCTTTGGATAATTTATATCTCTCGAGAGCATTGCCACTTTGTGAAAACAGGAGCACATATCACATTTAAAGCCTGCCCAGGTTTGTTGATAACGACATGGGGACTGCGCATGTTAATCAAGAAGGCGGATGCAGAAAAATTATCTTCTTATAGTAATAGCCTTATGTTCTTGAATAATGAATTTGAAGAATCTGATGCGTGCCATCTTAGGGTTGATCATGTGGAAGAAAGTATCAGCAGTTCTGGACCTAAAATTCAGCTTCCATATAATTGGTTGGTTACTGAGGAAGAGGAAGCTGAGAATTCTCAAGCCAAGTCAAAAGAAATTCGTCTTTCTAATCTAGGCCTTTAA 3462 0.3746 MASSSSNNSSSSRICKYDVFLSFRGPDTRNKFIDHLYNHLIKKGIFVYKDDKTLQKGEFISSQLLEAIRDSRVSIVVFSKTYTGSSWCLDEMVAISECRRELNRTVIPVFYDVDPSHVRKQINRRQEINRRQEAITKKLKYDPDKANRWQEAMTELANLVGFDLRDKPEFTEIEKIVQAVIKTLGHKFSGFANDLVGMQPRIEELEKLLKLTSEDVEFRVLGIWGMGGVGKTTHATVLYDRISYQFDVRCFINNTSKIYMDGGVVAVQKQILRQTLDERNLDSYDTCEIAGIMINRLQSGIKVLLVLDNVDQLEQLQELAINPKLLWRGSRIIITTRDEHILRVYGADTVHEVSMLNSNDACELFCRKAFKGEERSTNCVELIPEVLKYAQHLPLAIRVVGSFLCTRDATQWRDALDRLRINPNSKIMDVLQMSVDGLQHEEKEIFLHIACFFKGEREDYVKRILDACGLHPHIGIQRILEKSLITIKNQEIHMHDMLQKLGKKIVRHQFPEDPGSWSRLWQYHDFYQVLTTETGTNNIKAIVLDQKENFSKCMAEGFSNMRNLGLLILYHNNFLGNLNFLSNNLRYLLWHGYPFTSLPPNFEPCYLVELNMPDSSIQRLWEGRKDLPYLRSMDVSNSKYLTETPKFFWTPKLERLDFTGCTNLTQVHPSIGHLTELVFLSFQNCSSLVNLDFGRVSNLNSLRVLRLSGCTKLQKTPEFTGASNLEYLDMDGCISLTTVHESIGVLAKLRFLSLRDCIILAGMPNSINTMTSLVTLDLCGCLKLTTLPLGRNLSSSHMESLIFLDVSFCNLHELPNPICELQCLERLSLQGNNFTSLPSNLCMLGSLAYLNLAHCHKLQTFPHIFSKKKSSLVGSYFKVASGSRNHRSGLHIFDCPKLKFSLLDNHEYFSNLLCKWLERLLKEPRHFRCGFDIIVPWNWKNIDAQLTDHIPEWFHHQFRGHSIIRIGKSNVDDNWVGFSFCVVFEVNNRLAYYGSSHGSTSSALPHPFYLSFESEHTEERFDMPLNLELEKIDGSKHLWIIYISREHCHFVKTGAHITFKACPGLLITTWGLRMLIKKADAEKLSSYSNSLMFLNNEFEESDACHLRVDHVEESISSSGPKIQLPYNWLVTEEEEAENSQAKSKEIRLSNLGL 1153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04583 1153 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 162 IPR035897 -
Tsu02g04583 1153 Gene3D - 14 189 IPR035897 -
Tsu02g04583 1153 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 192 714 - -
Tsu02g04583 1153 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 192 714 IPR044974 GO:0006952
Tsu02g04583 1153 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 713 788 IPR044974 GO:0006952
Tsu02g04583 1153 SMART till_3 16 159 IPR000157 GO:0007165
Tsu02g04583 1153 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 790 1046 - -
Tsu02g04583 1153 Gene3D - 355 439 IPR042197 -
Tsu02g04583 1153 Gene3D Ribonuclease Inhibitor 722 928 IPR032675 -
Tsu02g04583 1153 Gene3D Ribonuclease Inhibitor 534 720 IPR032675 -
Tsu02g04583 1153 Pfam NB-ARC domain 209 421 IPR002182 GO:0043531
Tsu02g04583 1153 Gene3D - 190 350 IPR027417 -
Tsu02g04583 1153 Pfam Leucine Rich Repeat 606 623 IPR011713 -
Tsu02g04583 1153 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 790 1046 IPR044974 GO:0006952
Tsu02g04583 1153 SUPERFAMILY L domain-like 494 869 - -
Tsu02g04583 1153 Pfam C-JID domain 948 1042 IPR045344 -
Tsu02g04583 1153 Pfam TIR domain 16 187 IPR000157 GO:0007165
Tsu02g04583 1153 ProSiteProfiles TIR domain profile. 15 184 IPR000157 GO:0007165
Tsu02g04583 1153 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 192 449 IPR027417 -
Tsu02g04583 1153 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 713 788 - -
Tsu02g04583 1153 PRINTS Disease resistance protein signature 220 235 - -
Tsu02g04583 1153 PRINTS Disease resistance protein signature 297 311 - -
Tsu02g04583 1153 PRINTS Disease resistance protein signature 390 404 - -
Tsu02g04583 1153 PRINTS Disease resistance protein signature 697 713 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04583 Tsu-Chr2 54804292 54812587 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04583 697 862 WRKY Transcription Factor Family AT4G12020 35.119 1.83e-15 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04583 - - var:108332841 1340.87