Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04547 ATGGTTTCCCCGGAAAACACCAATTGGCTTTTCGATTACACTTTGATTGATGAAATTCCCGTCTCCGTTGATGGTTCCTTCGCCTTCACGTGGCCCCCACCACACCCTTCCAATGTCAGTGTTGAAATGGATGGCTCTTTGGGGGATTCTGATGGTATCAAAGATCCTGGTTCGAAGAAGAGGGGTAGATCGGATTCTTGTGCTCCTTCCAGCTCTAAGGCATGTCGAGAGAAGCTGCGGAGGGATAAGCTGAATGacaaGTTTGTTGAATTAGGCTCCTTCTTGGAGCCTGGAAGGTCTCCCAAAACAGACAAGGCAGCAATTCTGATTGATGCTGCCCGCATGGTGACACAGTTGCGGGGTGAAGCTGAGAAGTTgaaaaactcaaattcaaatCTTCAAGAGAAGATTAAAGAGTTGAAGGTTGAGAAGAATGAACTCCGTGATGAGAAGCAGAGGCTTAAGGCTGAGAAAGAGAAGTTGGAGCAGCTGATGAAATCAATGAATGCACAACCCAGTTTCTTGACACACCCTCCTGCAATCCCTGCTGCATTTGCTCCACAAGGCCAAGTCCCTGGCAACAAGTTAATGCCTTTCATGAGTTATCCAGGAGTTGCCATGTGGCAATTCATGCCACCTGCCTCCGTGGATACCTCGCAGGATCATGTACTCCGTCCACCAGTCGCCTAA 690 0.4739 MVSPENTNWLFDYTLIDEIPVSVDGSFAFTWPPPHPSNVSVEMDGSLGDSDGIKDPGSKKRGRSDSCAPSSSKACREKLRRDKLNDKFVELGSFLEPGRSPKTDKAAILIDAARMVTQLRGEAEKLKNSNSNLQEKIKELKVEKNELRDEKQRLKAEKEKLEQLMKSMNAQPSFLTHPPAIPAAFAPQGQVPGNKLMPFMSYPGVAMWQFMPPASVDTSQDHVLRPPVA 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04547 229 Gene3D - 71 147 IPR036638 GO:0046983
Tsu02g04547 229 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 68 119 IPR011598 GO:0046983
Tsu02g04547 229 MobiDBLite consensus disorder prediction 38 76 - -
Tsu02g04547 229 PANTHER BHLH TRANSCRIPTION FACTOR 1 229 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Tsu02g04547 229 CDD bHLH_AtILR3_like 73 148 - -
Tsu02g04547 229 PANTHER BHLH DOMAIN CLASS TRANSCRIPTION FACTOR 1 229 - -
Tsu02g04547 229 Pfam Helix-loop-helix DNA-binding domain 72 119 IPR011598 GO:0046983
Tsu02g04547 229 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 73 144 IPR036638 GO:0046983
Tsu02g04547 229 Coils Coil 116 171 - -
Tsu02g04547 229 SMART finulus 74 125 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04547 Tsu-Chr2 54472939 54475566 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04547 1 229 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 68.936 1.83e-111 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu02g04547 HLH 7.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04547 - - ccaj:109815088 380.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04547 02 54472939 54475566 Tsu02g04547 02 54472939 54475566 ECH
Tsu02g04547 02 54472939 54475566 Tsu02g03062 02 33933317 33937862 PCT