Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04542 ATGGTAATAATTCAACAATATATGGATGTTATAAAGTCTACATTTTGCCTTGTTTTGGTTCTTAATATTGTAGCAGTTATCAGCATTGAAGATAAAAAGGAAACAGATGAAGAATTCATTAGCAGATTATTTGATCCTGCATCTGGATTATTGGATGAGGATACGGCAGAGATACTATGGATACTTTGTATGGAAGATTTGATTCATGTAAGGAAAGATATTGGAGATTTTGGCTTATGCCTACCAAAGGAATCACTTAGTAGCAACAATGAAATTAGCACAGAAATTGGATCAATATCAAGAGAAAACATGCAAAAATTGATTAGTACTTGCAATCCACAGTTGAAGGAAAACTTTCTTAACTGTTTGAGAAAAAACAATGTTCCATTCCAAGATGAATCCAAGAATTGGAAAGATGGTTACGAGGGATCAAGTTTATCCAGAAGATATCTACGTCGAGTTTCTCCTCGACACTTGGGAGAAAAGAAAGATGATAGCGATTCAGATTCAGATTATGATTCAGAtgattctgattctgattctgatAAATCGTCTAAAAAGTCGAAGAAGAAGTCATCTGAGGCTAAACACCAACAAGCAATTATTCAAGCCATGGTTATAACTGCATTGGTGACATTTATATTTGCAGCATGTATCTTTTTATGTTGTTGTAGGTTTTGTGGAGGTGGTAGAGATGGACAGACCGATGAAAGGCCGCTTCTCAGCATGAGCATGAGTGATTATTCTGTTGGTTCTTCTTCTAATAATAATCACTCAAAATTTTCCCTAACCGAGGAGAAACTTGCGGCTCAATCAATAAGTAATGCTTTTCTTGATGACAAAAAGAACTCAATGAAAGAAGATGCTGCAAGACCATCATTTGACCTTAAACCTCCACCTGGAATGAAAGTAGATGCCGCAAGACCATCATTTGACCTTAAACCTCCACCCGGAATGAAAGAAGATGCTGCAAGACCATCATTTGACCTTAAACCTCCACCTGGATCATTTAACCTTAAACCTCCACCTGGTAGGGTAGAATCAGCTTTGAAACCTCCTCCTGGAAGACCTGATCCTCTTCCACCAGAACCAGCACCGGCTCAGACTTCCGATGATGCCAAAAATCCCCCGCCTCCTCCTCCTGGACTATCAATGCCAAGCAGTAGTGgccctcctcctcctcctcctccaggAATACCGAAGCCTAGCAATGCTGGCCCTCCTCCACCTCCACCGCCGACAACTGGAAATGGTGGTCCTAGGCCTCCACCACCGCCACCAACTCGTGGAAAATCGGGCGGTCCTGGTCCACCACCGCCTCCTATGGTTGGTGGAGGTCCAGGTCCTCCAAGGCCTCCTCCACCATTTGGCAAAAAGAATGCTAAACCTTTACCTGGCGGACCAAAATTTCCAGGGAAGGGTGAAGATGCAGGTGGTGTTCCTAAAGCTAAGTTAAAGCCTTTTTTTTGGGATAAGGTTCAAGCAAACACGGATCAAACTATGGTTTGGAATCAACTCAAAGCAGGATCATTCCAGTTTAATGAAGAAATGATGGAAACACTTTTTGGATATAGTAATCCAACAATGGAAAAAGGCAAAGGTGGACTGAAGAAAGAGTCTGCCCGTGCTTCTTCCCCTCAGTTTGTCCAAGTAATTGACTCAAAGAAAGCACAAAATTTATCAATTCTTTTGAAAGCATTAAATGTGACATTAGAAGAAGTTAGTGATGCGCTACTTGaagGAAATGAGCTCCCAACAGAATTCCTTCAAACACTGCTGAAGATGGCTCCAACCCAAGAGGAAGAGCTTAAACTTAGACTTTTCAGTGGTAATATTGCCCAACTTGGTCCTGCTGACCGGTTCCTTAAATGCCTGGTTGAGATTCCTTTTGCCTTTAAACGAATGGAGGCATTGctttacatgagttctcttaaAGAGGATCTCACCTCTACACGAGATTCTTTTGCTATTTTAGAGGTTGCTTGTAAGGAACTAAGAAGCAGTAGATTGTTCCTCAAGCTACTAGAAGCAGTTCTAAAAACAGGAAACCGAATGAACGACGGAACATTTCGTGGAGGCGCACTTGCATTCAAACTTGATACACTACTAAAATTGTCTGATGTAAAAGGAGTAGATGGAAAAATCACACTCTTACACTTCGTTGTTCAAGAGATAATCCGAACAGAAGGAATACGAGCAGCTCGAAATATGAGAGAGAGTGCTAGTTTCTCTAGTATAAAAACTGATGACCTTCTCGAAgacattaatcaagaatcagaagAACACTACCGCGAAATGGGTCTTCAAGTTGTTTCGCGTTTAAGCAGTGATCTTGAGAATGTGAAGAAAGCAGCAGCATTGGATGCTGATAGTTTAACAGGAACAACAGCTAAATTAGGCCATGGTCTACTAAAAACAAGAGATTTCGTAAAGAAAGAGATGGCGGAAAATTTAGAGAATGACAAAGGGTTTTATGAAACGGTGAAAAGTTTTGTGGAGAAAGCCGAGGTTGATGTCACAGCTTtgttagaagaagagaagaaaatcaTGGCTCTTGTGAAGAGTACTGGTGAACACTTTCATGGGAGTACAGGGAGAGATGAAGGGTTGAGATTGTTTGTAATAGTACGTGATTTCTTAATAATGTTGGATAGAGTTTGCAAAGAGTGCAAAGATCTTCAAAAAGCACCAAAGCCAACACCAAAGAatgcaggtgaaacaaagaaTGTGAAACAAGAAAGTGAAACAAAGAATGtgaaaaaagaaagtgaaaaaaataatgtgaaaCAAGATACTGCTGGAACTAGAGTACCACCACCACCCTCGAAAGCTCGTCCTCCACCGCCTGATATTCGGCAAAAATTGGTTCCGGCAGTGGTAGATAGAAGAGTGGATGATTTTAGTTCAGATGAAGACAGTCCATAG 2925 0.3877 MVIIQQYMDVIKSTFCLVLVLNIVAVISIEDKKETDEEFISRLFDPASGLLDEDTAEILWILCMEDLIHVRKDIGDFGLCLPKESLSSNNEISTEIGSISRENMQKLISTCNPQLKENFLNCLRKNNVPFQDESKNWKDGYEGSSLSRRYLRRVSPRHLGEKKDDSDSDSDYDSDDSDSDSDKSSKKSKKKSSEAKHQQAIIQAMVITALVTFIFAACIFLCCCRFCGGGRDGQTDERPLLSMSMSDYSVGSSSNNNHSKFSLTEEKLAAQSISNAFLDDKKNSMKEDAARPSFDLKPPPGMKVDAARPSFDLKPPPGMKEDAARPSFDLKPPPGSFNLKPPPGRVESALKPPPGRPDPLPPEPAPAQTSDDAKNPPPPPPGLSMPSSSGPPPPPPPGIPKPSNAGPPPPPPPTTGNGGPRPPPPPPTRGKSGGPGPPPPPMVGGGPGPPRPPPPFGKKNAKPLPGGPKFPGKGEDAGGVPKAKLKPFFWDKVQANTDQTMVWNQLKAGSFQFNEEMMETLFGYSNPTMEKGKGGLKKESARASSPQFVQVIDSKKAQNLSILLKALNVTLEEVSDALLEGNELPTEFLQTLLKMAPTQEEELKLRLFSGNIAQLGPADRFLKCLVEIPFAFKRMEALLYMSSLKEDLTSTRDSFAILEVACKELRSSRLFLKLLEAVLKTGNRMNDGTFRGGALAFKLDTLLKLSDVKGVDGKITLLHFVVQEIIRTEGIRAARNMRESASFSSIKTDDLLEDINQESEEHYREMGLQVVSRLSSDLENVKKAAALDADSLTGTTAKLGHGLLKTRDFVKKEMAENLENDKGFYETVKSFVEKAEVDVTALLEEEKKIMALVKSTGEHFHGSTGRDEGLRLFVIVRDFLIMLDRVCKECKDLQKAPKPTPKNAGETKNVKQESETKNVKKESEKNNVKQDTAGTRVPPPPSKARPPPPDIRQKLVPAVVDRRVDDFSSDEDSP 974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04542 974 MobiDBLite consensus disorder prediction 956 974 - -
Tsu02g04542 974 PANTHER FORMIN-RELATED 4 135 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Tsu02g04542 974 PANTHER FORMIN-RELATED 180 903 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Tsu02g04542 974 MobiDBLite consensus disorder prediction 908 929 - -
Tsu02g04542 974 MobiDBLite consensus disorder prediction 939 953 - -
Tsu02g04542 974 Coils Coil 911 931 - -
Tsu02g04542 974 Gene3D Formin, FH2 domain 480 929 IPR042201 -
Tsu02g04542 974 SMART it6_source 286 931 IPR015425 -
Tsu02g04542 974 Pfam Formin Homology 2 Domain 481 883 IPR015425 -
Tsu02g04542 974 MobiDBLite consensus disorder prediction 894 974 - -
Tsu02g04542 974 MobiDBLite consensus disorder prediction 280 479 - -
Tsu02g04542 974 ProSiteProfiles Formin homology-2 (FH2) domain profile. 475 909 IPR015425 -
Tsu02g04542 974 SUPERFAMILY Formin homology 2 domain (FH2 domain) 422 896 - -
Tsu02g04542 974 MobiDBLite consensus disorder prediction 157 195 - -
Tsu02g04542 974 MobiDBLite consensus disorder prediction 335 461 - -
Tsu02g04542 974 PANTHER FORMIN-LIKE PROTEIN 4 135 - -
Tsu02g04542 974 PANTHER FORMIN-LIKE PROTEIN 180 903 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04542 Tsu-Chr2 54427148 54431757 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04542 446 965 FH2 protein (formin) Gene Family AT5G54650 59.117 0.0 573
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04542 - - gmx:100782988 698.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04542 02 54427148 54431757 Tsu02g04542 02 54427148 54431757 ECH
Tsu02g04542 02 54427148 54431757 Tsu02g03067 02 33975405 33982840 PCT