Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04519 ATGGCTGATGATGATCAATTTCATCATTCAAGTGGAAATTGGTGGGACACAGCATCAAGAAATATGAGATTTGATCATCAAAGTGGAGGAACATcacaatcttcaaattcatctGCCATCACCACCAACAACATAGTTGATTTTGGTTGGCAAAATTCAGATATGGTAGAGATAAAACCAAGATCTTCTATGGAAAATTCTTTTCATGATACTcaaaaacttcaacaaaatcaagaCTCTTCAACTTCTTCTGATCCAAACTTGCATATGATGGGTTTAGGCCTTTCTTCTCATTCCATGGATTGGAATCAACCTTCTTTGATAGGTCAGAAGGGAGCAGAGAATAGTTTCAGCACAATGTTACAAGAGAATTTAAGTTCAACAAGGAATAATTTTGAGCAAGAAAATGTGATGGGAATATGTCAACAAGTGAATAGAAGTAATTTCTCTTTGGATCAAAATCAATTTAGTCCTCAATATAGTTCTGGAGATAGCAATGTTATTACAAGTCAATGTTTACCTACAAATTTTCAAATGGATTCTTCAACTTTATATGGAACTCCACCATCAATTTTACAAGGTTCATTTGAGAATAGATCCATGAGTAGTTTTCCATATCCAACAAATAACTATGGATTAAATTCTAATAATGAGTTGAATATGAATATGCCTTCTAATGATTGGTCTAATAAAGTTCCTCAATTTTTGATGAGAACTTCACCTCCAAAACAACTTACCAATAATCAGTTGCATTTTACTAATAACACCCCCTTTTGGAATGCTTCTCATGAGGGTCCTAATTCCATCAAGGATGTTAGGTCAAGTTTCTTCCCTTCTTTGCAACCTCAATTCTCCACCCCAAGTTTTGATCCTCACTCAAAGAATATATCTGAGGTGAATACTGTGGTGAAGAAAAGTGGAAGTGAGCCAGCACCCAAAAGGACCCGTAACGAAACCCCATCAACTTTGCCAGCTTTTAAGGTGAGAAAAGAGAAGATGGGAGACAGAATCACTGCACTCCAACAATTAGTGTCTCCCTTTGGAAAGACTGATACAGCCTCAGTGCTTTCTGAAGCCATCGAATACATCAAATTCCTCCATGAACAGGTTACAGTTTTGAGCACACCATATATGAAAAGTGGAGCTCCCATAGAGATTCATCAGATCAATTCTAGCAAATCAAAAAAATCCGAGAGTGCAAAGCAAGACCTTAAAAGTCGAGGGTTATGTTTGGTACCGGTTTCTAGCACATTTCCAGTGACTCATGAAACGACAGTTGATTTTTGGACACCAACATTCGGAGGAACATCAAGATAA 1317 0.3591 MADDDQFHHSSGNWWDTASRNMRFDHQSGGTSQSSNSSAITTNNIVDFGWQNSDMVEIKPRSSMENSFHDTQKLQQNQDSSTSSDPNLHMMGLGLSSHSMDWNQPSLIGQKGAENSFSTMLQENLSSTRNNFEQENVMGICQQVNRSNFSLDQNQFSPQYSSGDSNVITSQCLPTNFQMDSSTLYGTPPSILQGSFENRSMSSFPYPTNNYGLNSNNELNMNMPSNDWSNKVPQFLMRTSPPKQLTNNQLHFTNNTPFWNASHEGPNSIKDVRSSFFPSLQPQFSTPSFDPHSKNISEVNTVVKKSGSEPAPKRTRNETPSTLPAFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEAIEYIKFLHEQVTVLSTPYMKSGAPIEIHQINSSKSKKSESAKQDLKSRGLCLVPVSSTFPVTHETTVDFWTPTFGGTSR 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04519 438 Gene3D - 327 381 IPR036638 GO:0046983
Tsu02g04519 438 PANTHER TRANSCRIPTION FACTOR BHLH123-LIKE ISOFORM X1 36 427 - -
Tsu02g04519 438 MobiDBLite consensus disorder prediction 62 95 - -
Tsu02g04519 438 MobiDBLite consensus disorder prediction 62 90 - -
Tsu02g04519 438 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 36 427 - -
Tsu02g04519 438 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 327 381 IPR036638 GO:0046983
Tsu02g04519 438 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 317 366 IPR011598 GO:0046983
Tsu02g04519 438 SMART finulus 328 372 IPR011598 GO:0046983
Tsu02g04519 438 CDD bHLH_AtbHLH_like 323 374 IPR045239 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04519 Tsu-Chr2 54191329 54195685 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04519 109 438 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G20640 43.342 4.45e-67 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04519 - - gmx:100796549 522.316
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04519 02 54191329 54195685 Tsu02g04519 02 54191329 54195685 ECH