Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04517 ATGTCTTTAATCATAATGAATATAATTTTCCATGTTTATCatatacttatatatttttctcaaatttctctAGCAATTAACTCAATATCACAATCCATTTCCTTAGTAGATGATGGAAACACCTTAGTTTCCAAAGGTGGAATCTATGAACTTGGATTCTTCACACCAGGAAATTCCAACAAACGTTACCTTGGAATTTGGTACAAGAAAATTCCAATTCAAACAGTTGTTTGGGTTGCAAACAGAATCAATCCAATCAATGATTCATCTGGAACATTAACATTAAACAACATCACTGGAAACCTTGTCCTCACTCAGAATAATGAAACTGTTGTTTGGTCTACAACATCAAATTCTCTTCGAAAGAAATCGGTAGTAGCAATTCTTTTAGATACCGGAAATCTTGTACTAATCgatgagaaagaagaaaacaaagaaaatttctTGTGGCAGAGTTTTGATTATCCAACTGATACTTTCTTACCAGAAATGAAGTTTGGTTTGGACTTCAAAACTGGTCTTAATCGGCGTTTAACTGCCTGGAAAAGTCCTGATGATCCATCACCGAGTGATTTTTCGTTCGGTATGGTTCCACATAACTATCCTGATGCATATATGATGAAAGGTGATAAAAAATTCTACAGAAGTGGACCATGGAATGGTTTGCATTCAAGTGGTTCGCCACAAGTAAGGCCGAATCCAATTTATGATTTCAGGtttgtttataataaagatGAACTTTACTACACTTATAGCCTAAAAAACTCGTCTGCTGTCACGCGGTTAGTTTTAAATGCAACTGCGTCCCTTCGTTACCGTTATGTGTGGATTGAATCAGCGAAAAGATGGGAAACCTACACGTCGGTACCATTGGATTTATGTGATACTTATGCACTTTGTGGAGCTTATTCAAGTTGTGTTATTTCTGATTCACCTGTGTGTCAATGTATGAAAGGTTTTAAACCTAAGTCACCGCAAGCATGGTATGCGATGGATTGGTCTAATGGATGTGTCCGAAATAAGGCGTTGCGTTGCGAGGAAAAAAACAAGGATGGATTTGTGAAATTGAGTGGTATGAAAGGGCCTGACACTACAAATAGTTGGTTGGATCAAACAATTGGTTTGGAAGAATGTAGAGTGAAGTGTTTGAATAATTGTTCTTGTATGGCATATGCAAATTCAGATGTAAGAGGAAAAGGGAGTGGTTGTGCTTTGTGGTTTGGTGATTTAATTGATATTAGACAATTTGCAGCTGGAGGGCAAGATTTATATGTTAGAATGGATTCTTCAGAATTAGATCATGTCAATGAGGGTCACAACAAGAAGAAAGGAGTTATAGTGGCAGTAATAGTTTCTCTTGCCATAGCAATTATTTGTGGTATACTCATACTTGGTTGGTGTTATAGACAGAAATCAAGCACTTATGTAAAAGATAAATCAGATTTCAGTATCAAAGAAGATCGTCAAAACAGTGGGATGCAGCAGGTGGATGATGGAGATTTACCAGTCTTTAACTTGTCAACAATAGCAAAAGCCACTAACAACTTTACAATCAGTAACAAAATTGGAGAAGGTGGTTTTGGACCTGTATACAAGGGAATTCTAGCTGATGGAGTGGAAATTGCTGTGAAAAGGCTTTCCACAAGCTCAGGTCAAGGATTGAATGAGtttaaaaatgaagtaaaattGATTGCGAAACTTCAACATCGAAATCTTGTAAAGCTTCTTGGTTGTTGCcttgaaggagaagaaaaaatgttggTTTATGAATACATGCCTAATAGTAGCTTGGACTCCTTTATATTTGATGAGCAGAAAAGTGAATTACTAGATTGGTCAAAGCGTTTCGATATTATATGTGGAATTGCTAGGGGACTTGTCTATCTTCATCAGGATTCGAGACTCAGGATTATTCACAGAGATCTAAAATTGAGTAATGTTTTACTAGATAAGGAAATGAATCCCAAAATTTCAGATTTTGGCATGGCTAGAATTTTCGGAGGAGATCAAAACGAAGGAAACACAAGGAGAATAGTTGGAACATATGGTTACATGGCACCGGAATATGCTTCAGATGGTTTATTTTCAGTCAAGTCAGATGTCTTCAGTTTTGGTGTTTTGTTGATGGAGATTATATCGGGGAAGAGAAGTAGAGGATACTATAATCAAAACCAAAGCCACAATCTCATAGGCCATgcATGGAAACTTTGGAAAGAAGGAAGACCCTTAAAGTTGATTGATAAAAGCATAGGAGACTCTTGTTTTATATCACAAATATTGCATTGCATTCATGTTAGTCTTTTATGTGTTCAACAAAATCCAGAGGATAGGCCAGTAATGTCATGTGTGATTTTAATGTTGGTAAGTGATATTGAATTGCCTGAACCAAAACAGCCAGGATTCTTTTTGAAAGATTCAAGTGAAGGAGAATCCTCTACAAGTAACCAGCTACTAAGTTCTACCAATGAAATAACTATTACATTATTGGAGGCTAGATGA 2499 0.3505 MSLIIMNIIFHVYHILIYFSQISLAINSISQSISLVDDGNTLVSKGGIYELGFFTPGNSNKRYLGIWYKKIPIQTVVWVANRINPINDSSGTLTLNNITGNLVLTQNNETVVWSTTSNSLRKKSVVAILLDTGNLVLIDEKEENKENFLWQSFDYPTDTFLPEMKFGLDFKTGLNRRLTAWKSPDDPSPSDFSFGMVPHNYPDAYMMKGDKKFYRSGPWNGLHSSGSPQVRPNPIYDFRFVYNKDELYYTYSLKNSSAVTRLVLNATASLRYRYVWIESAKRWETYTSVPLDLCDTYALCGAYSSCVISDSPVCQCMKGFKPKSPQAWYAMDWSNGCVRNKALRCEEKNKDGFVKLSGMKGPDTTNSWLDQTIGLEECRVKCLNNCSCMAYANSDVRGKGSGCALWFGDLIDIRQFAAGGQDLYVRMDSSELDHVNEGHNKKKGVIVAVIVSLAIAIICGILILGWCYRQKSSTYVKDKSDFSIKEDRQNSGMQQVDDGDLPVFNLSTIAKATNNFTISNKIGEGGFGPVYKGILADGVEIAVKRLSTSSGQGLNEFKNEVKLIAKLQHRNLVKLLGCCLEGEEKMLVYEYMPNSSLDSFIFDEQKSELLDWSKRFDIICGIARGLVYLHQDSRLRIIHRDLKLSNVLLDKEMNPKISDFGMARIFGGDQNEGNTRRIVGTYGYMAPEYASDGLFSVKSDVFSFGVLLMEIISGKRSRGYYNQNQSHNLIGHAWKLWKEGRPLKLIDKSIGDSCFISQILHCIHVSLLCVQQNPEDRPVMSCVILMLVSDIELPEPKQPGFFLKDSSEGESSTSNQLLSSTNEITITLLEAR 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04517 832 CDD B_lectin 38 156 IPR001480 -
Tsu02g04517 832 PANTHER - 26 829 - -
Tsu02g04517 832 ProSitePatterns Serine/Threonine protein kinases active-site signature. 637 649 IPR008271 GO:0004672|GO:0006468
Tsu02g04517 832 SUPERFAMILY alpha-D-mannose-specific plant lectins 76 187 IPR036426 -
Tsu02g04517 832 Gene3D Transferase(Phosphotransferase) domain 1 592 794 - -
Tsu02g04517 832 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 26 829 - -
Tsu02g04517 832 Gene3D - 24 153 IPR036426 -
Tsu02g04517 832 CDD PAN_AP_plant 343 426 - -
Tsu02g04517 832 Pfam Domain of unknown function (DUF3403) 791 832 IPR021820 GO:0004674
Tsu02g04517 832 Gene3D Phosphorylase Kinase; domain 1 476 591 - -
Tsu02g04517 832 ProSiteProfiles Protein kinase domain profile. 516 801 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g04517 832 SUPERFAMILY Protein kinase-like (PK-like) 494 787 IPR011009 -
Tsu02g04517 832 Pfam D-mannose binding lectin 75 182 IPR001480 -
Tsu02g04517 832 CDD STKc_IRAK 522 787 - -
Tsu02g04517 832 PIRSF SRK 1 832 IPR024171 GO:0004674
Tsu02g04517 832 SMART serkin_6 516 802 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g04517 832 SMART ntp_6 348 427 IPR003609 -
Tsu02g04517 832 Pfam S-locus glycoprotein domain 214 324 IPR000858 GO:0048544
Tsu02g04517 832 Pfam PAN-like domain 345 413 IPR003609 -
Tsu02g04517 832 ProSiteProfiles PAN/Apple domain profile. 345 428 IPR003609 -
Tsu02g04517 832 SMART blect_4 33 156 IPR001480 -
Tsu02g04517 832 Pfam Protein tyrosine and serine/threonine kinase 517 782 IPR001245 GO:0004672|GO:0006468
Tsu02g04517 832 ProSiteProfiles Bulb-type lectin domain profile. 27 150 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04517 Tsu-Chr2 54138305 54141930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04517 433 812 Receptor kinase-like Gene Family AT4G23190 50.765 2.06e-133 408
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu02g04517 PK_Tyr_Ser-Thr 2.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04517 - - gmx:100778155 1307.35