Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04516 ATGAGACAAGCAGGTGCATATTCAAATTTACTATGTGGTGGAATATCAGGAAGAACAGGACCACATTCATTACCATTAGCAAGAATAAAGAAGATAATGAAGAATTCAAGTGAAGATGTGAAAATGATATCAGGTGTAGCACCAATTGTTTTCTCAAAAGCTTGTGAACTTTTCATTGAAGAACTTACAAGAAGGTCTTGGATTATGGCTATTGATGGTAAAAGAAGAACTTTGAATAAAGAAGATATTGCTTCTGCTGTTATAGCTActgatatatttgattttttgattacTTTGGTTTCTAATTCTGATGCAACTGATGCTAATAATACTGTTATCCAAATGGAAACTATATGA 357 0.3053 MRQAGAYSNLLCGGISGRTGPHSLPLARIKKIMKNSSEDVKMISGVAPIVFSKACELFIEELTRRSWIMAIDGKRRTLNKEDIASAVIATDIFDFLITLVSNSDATDANNTVIQMETI 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04516 118 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 23 87 IPR003958 -
Tsu02g04516 118 Gene3D Histone, subunit A 14 102 IPR009072 GO:0046982
Tsu02g04516 118 SUPERFAMILY Histone-fold 15 96 IPR009072 GO:0046982
Tsu02g04516 118 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 107 - -
Tsu02g04516 118 PANTHER HAP5 SUBUNIT OF HAP COMPLEX 1 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04516 Tsu-Chr2 54130250 54130606 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04516 22 107 CCAAT-HAP5 Transcription Factor Family AT1G54830 63.953 8.39e-33 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Tsu02g04516 CBFD_NFYB_HMF 3.4e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04516 - - gmx:100777614 193.356