Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04507 ATGGAAAGCTTCAAGATGCTATTAGTTTATAGCTTTTTTCTCTTCAACTTGATACCAACCTTCAACACCTTAGAAACCATTGTTGAAGGACAATCtctaaaacaaaatgaaacatTAATCTCAAAAAATGGAACTTTTGAAGCTGGTTTTTTCAACTTTGGAGATTCAAATATCCAATATTTTGGTATATGGTACAAAGATATTTCACCAAAAACACTTATATGGATCGCAAATAAAGATTCTCCATTAGGAAACTCATCAGGAACATTGAATCTTACTGATAAAGGAACTCTTATTGTTCTTGATTCAAAAGGGGTTATGATATGGTCTTCTAATTCATCGAAAACCGCTACAAAAGTTACAAAACCAATTGTTGAATTGTTGGAAAGTGGTAACCTTATTGTGAAAGATGAAACAAACCCAGATGTTGTTTTTTGGCAAAGTTTTGATCTTCCTAGTGATACTTTGATTCCAGGTATGAGACTTCGAACCGATTTAGTAACCGGTAATTATACCGGTTTAGTTTCTTGGACGGATACACAAGATCCTGCTACTGGTTTATATTCATATCATATTGATTCTAATGGTTTTCCTCAAGTAGTGATTACTAaaggaaataaattattgtttcGAGTTGGTTCTTGGAATGGAAATATTCTTTCTGGAATTGCTTCTCAGACACTTTACAAAGCTTATAATTTTACATTTGTGATTACTGATAAAGAAGTTTCTTATGGATATGATCTTTTGGATGAGTCAGTTGTTTCGAGGTATATATTGACTTCATCCGGGCAAATATCGCGTTATATTTGGTCAGATCAGACAAATAGTTGGCAAATTTTCTTTGTTGGTCCTATGGATCAGTGTGATAATTATGCTCTATGTGGTGTAAATTCTAATTGTGATGCTGATAATACACCGTTAGTATGCGATTGTCTTGAAGGTTTCATTCCGAAGTCTCAAGAAAATTGGAATTCGCAAAAATGGTCTGATGGTTGTGTTAGGAAAGTGAAATTAGATTGTGATAACAACAGTGATGGTTTTTTGAAGCATGAGGGAATGAAGTTGCCGGATACATCGAAATCATGGTATAATAAAAGCATGAACCTTGATGAATGTGAGAGATTCTGTCTGAGAAATTGTTCATGTACAGCTTATGCAAGTTTAGATATCAGAAATGGCGGAAGCGGTTGCTTGATTTGGTTTAATAACATTTTGGATGTCCGAAAACTAAGTTCCGGAGGACAAGATCTTTACATAAGAGTTGCAGCTTCAGAACTAGACCATAACACAGGCTCGAACAAGAAGAAGCTCGCTGGAATTCTAGTCGGATGTATTGTGTTTATTGTGATCCTGATAGTAGTAGGATTCTCCATACATCGGAGAAAGAAACTAGAAATACCAGGGATGATTCAAGTATTTAGCTTCAAGAATCAAACTGACAACAAAGAGAAGGAAGATATTGACATACCGATATTTGATTTATCAACGATAGCTAATGCAACTAATAACTTCTTCATTGATAACAAATTGGGGCAAGGAGGATTTGGACCTGTTTACAAGGGTAAATTGGAAAATGGACAAGATATAGCTGTGAAGAGGCTATGCAATACTTCAGGACAAGGGTCAAAGGAGTTCATAAATGAAGTTAAGTTAATTGCAAAACTTCAACACAGAAATCTTGTGAAACTACTTGGCTGTTGCATTCAAAATGATGAGAAACTCTTGATATATGAATTCTTGATCAACAGAAGCTTGGACTACTTCATTTTTGATGAAACTAGAAAAAGTTTAGTGCATTGGACTCAACGATTCCAAATAATCTGTGGAATTGCTCGAGGACTTCTTTATCTTCACGAAGATTCTAGATTAAGGATTATACATAGAGATCTCAAGACAAGCAATATTCTTCTAGACGAAAATATGAATCCTAAAATATCAGATTTTGGTCTCGCTAGAACATTATGGGGAGATGAAGGCGAAGGCGAAACAAGAAGAGTAGTAGGAACTTATGGTTACATATCTCCAGAGTTCGCAACACGTGGATTTTTCTCAGTGAAGTCTGATGTCTATAGTTTCGGCGTTattatattagaaacaattaGTGGAAAAAAGAATAGAGAATATTGTGACTATGACGATCTTGACCTTCTTGGATTTGCATGGCGGATGTGGTTCGAACAAACACCGATGGAACTAATAGACGAAACTCTACGCGATTCGTTTTTTGAAGCCGAACCTGAAATATCGAGATGTATTCAAATAGGACTTTTATGTGTTCAAGAGAGAGCTGATGATAGGCCAGATATGTCAGCTGCAGTTCTAATGCTTAATGGTGAAAAATCATTGCCTAATCCAAAGGAACCAGCCTTTTATCCACACCAATTAGGATCTTCATCAGGAACTAGTAAGCTGAATTCAAATAATGAAGTGCATTCAAATAATGAAGTTTCCATGACATTGTTACAAGCTAGatag 2478 0.3483 MESFKMLLVYSFFLFNLIPTFNTLETIVEGQSLKQNETLISKNGTFEAGFFNFGDSNIQYFGIWYKDISPKTLIWIANKDSPLGNSSGTLNLTDKGTLIVLDSKGVMIWSSNSSKTATKVTKPIVELLESGNLIVKDETNPDVVFWQSFDLPSDTLIPGMRLRTDLVTGNYTGLVSWTDTQDPATGLYSYHIDSNGFPQVVITKGNKLLFRVGSWNGNILSGIASQTLYKAYNFTFVITDKEVSYGYDLLDESVVSRYILTSSGQISRYIWSDQTNSWQIFFVGPMDQCDNYALCGVNSNCDADNTPLVCDCLEGFIPKSQENWNSQKWSDGCVRKVKLDCDNNSDGFLKHEGMKLPDTSKSWYNKSMNLDECERFCLRNCSCTAYASLDIRNGGSGCLIWFNNILDVRKLSSGGQDLYIRVAASELDHNTGSNKKKLAGILVGCIVFIVILIVVGFSIHRRKKLEIPGMIQVFSFKNQTDNKEKEDIDIPIFDLSTIANATNNFFIDNKLGQGGFGPVYKGKLENGQDIAVKRLCNTSGQGSKEFINEVKLIAKLQHRNLVKLLGCCIQNDEKLLIYEFLINRSLDYFIFDETRKSLVHWTQRFQIICGIARGLLYLHEDSRLRIIHRDLKTSNILLDENMNPKISDFGLARTLWGDEGEGETRRVVGTYGYISPEFATRGFFSVKSDVYSFGVIILETISGKKNREYCDYDDLDLLGFAWRMWFEQTPMELIDETLRDSFFEAEPEISRCIQIGLLCVQERADDRPDMSAAVLMLNGEKSLPNPKEPAFYPHQLGSSSGTSKLNSNNEVHSNNEVSMTLLQAR 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04507 825 CDD B_lectin 31 152 IPR001480 -
Tsu02g04507 825 Pfam D-mannose binding lectin 72 177 IPR001480 -
Tsu02g04507 825 SUPERFAMILY Protein kinase-like (PK-like) 488 795 IPR011009 -
Tsu02g04507 825 ProSiteProfiles PAN/Apple domain profile. 341 423 IPR003609 -
Tsu02g04507 825 CDD PAN_AP_plant 337 423 - -
Tsu02g04507 825 ProSitePatterns Serine/Threonine protein kinases active-site signature. 626 638 IPR008271 GO:0004672|GO:0006468
Tsu02g04507 825 Gene3D - 21 149 IPR036426 -
Tsu02g04507 825 Pfam Protein tyrosine and serine/threonine kinase 508 773 IPR001245 GO:0004672|GO:0006468
Tsu02g04507 825 Gene3D Transferase(Phosphotransferase) domain 1 582 787 - -
Tsu02g04507 825 Gene3D Phosphorylase Kinase; domain 1 478 580 - -
Tsu02g04507 825 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 14 825 - -
Tsu02g04507 825 SMART serkin_6 505 743 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g04507 825 Pfam PAN-like domain 341 408 IPR003609 -
Tsu02g04507 825 Gene3D Hepatocyte Growth Factor 341 420 - -
Tsu02g04507 825 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 183 IPR036426 -
Tsu02g04507 825 SMART ntp_6 343 422 IPR003609 -
Tsu02g04507 825 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 14 825 - -
Tsu02g04507 825 Pfam S-locus glycoprotein domain 210 320 IPR000858 GO:0048544
Tsu02g04507 825 MobiDBLite consensus disorder prediction 799 825 - -
Tsu02g04507 825 CDD STKc_IRAK 511 779 - -
Tsu02g04507 825 ProSiteProfiles Bulb-type lectin domain profile. 24 148 IPR001480 -
Tsu02g04507 825 PIRSF SRK 1 825 IPR024171 GO:0004674
Tsu02g04507 825 ProSiteProfiles Protein kinase domain profile. 505 791 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g04507 825 SMART blect_4 30 152 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04507 Tsu-Chr2 54064580 54068862 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04507 424 794 Receptor kinase-like Gene Family AT4G23190 49.479 2.43e-121 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu02g04507 PK_Tyr_Ser-Thr 2.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04507 - - ccaj:109805721 1191.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04507 02 54064580 54068862 Tsu02g04507 02 54064580 54068862 ECH