Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04491 ATGTATTCCGAACCAGAATTTCCCTATCCAAGTAGTAGGAGTAAAATGGAAACCATCAAGTACTACTTCTACGAAGAAACAGAGTTCATGCCCGCAACAAACTTCTTCAATGACGATCGGAATATTCTTATTCGCAGAAACGGCGTTTCGATAATCGCTAAGGTCACAAAGAAGGATGATCAAGATGCATTTGTTCCGTATCTTGCTATGAACTACTTTGATCGCTTCTTATCCCGTTACAACATGAGGCATGTGGAAGGTCGGACTGATACCGAAAAAGTTCGTTTGATTGCTATATCTTGTTTCACCATATCTGCTAAAATGAGGATAGACTCATTCTCGGTTGACCAGTTTTTGTCTGACCTAAATAAAGACATGAATCTGAGGATAAATCATCAGATGGTAATGAGAATGGAGTTTCTCATTCTCCAAGTACTTAGCTGGAAAATGAAATCTGTGACTGCCTTCTGTTTTCTGAACCACTATTACCCTCACTTCAGACAATTCCGTGGTTTTAAACGTCGTAGCATTAATGAGATCATAGTTCAAGCTCAAGGAGACCACACCTTCGTTGACTACAGGCCTTCTCACATTGCGTTCTCCGCTTTTTTGGCTGCTGCCAAGATTGCATATCCCGTAAAGTATAGGGAAATTGCAGAAGACATTGAAAGCAAACTTAATGATCAAGAGCAGGTGGTGGAATGTGCGACGAAGATGTTTCAGCTTTGCAGGAGAATGAAGATCCAGATTGAGATCCCTGAATCAAGTGTTCACTCCACTTCAAGTAAAGTCTTGGCTTattcatctgaagaagaagaagagactGCATTAATTAGGCAAAAACGGAAGACGGGCAAGACCTCAGGGACTTACCAAGTGCAGGTGCCAGTAAAGGCGGAGAAGGTAATGGTGGTCGGTATATCTGATAAAAAAGGTGTAGCAAGGGTTGAGGCAGAAAATCGAAGTCTGTCCAAGGGCAAGGAAAAGGCAGTGGAAGTAACAGAAACATCTGTTGATGATAAAGCAAGGGTTGAGGCTATAATCCGACGAGCATTGGAAAACGGCAAGGCATTAGTGGGTGAGGAGCCACAAACACAAATAGAGGGGTTCAATTCAGAGATTTTAGAGCTTGTAGCACCTAAGAAGCTAATGATCTTTGAGCTGAAGTGGCCTACGGAAGTTCCACCGCTAGAACTACTAGCAATAAAAAATGCACTGCAAGAAGCAGAAGACGAAGAAGAAGTGGAAGAAGAGTTGCAGATAGATGACCAAGTCATTGTGGTTGCTGCAAGGCAATGCGCCTGTTGCGGCCTgaaatcattttga 1326 0.4155 MYSEPEFPYPSSRSKMETIKYYFYEETEFMPATNFFNDDRNILIRRNGVSIIAKVTKKDDQDAFVPYLAMNYFDRFLSRYNMRHVEGRTDTEKVRLIAISCFTISAKMRIDSFSVDQFLSDLNKDMNLRINHQMVMRMEFLILQVLSWKMKSVTAFCFLNHYYPHFRQFRGFKRRSINEIIVQAQGDHTFVDYRPSHIAFSAFLAAAKIAYPVKYREIAEDIESKLNDQEQVVECATKMFQLCRRMKIQIEIPESSVHSTSSKVLAYSSEEEEETALIRQKRKTGKTSGTYQVQVPVKAEKVMVVGISDKKGVARVEAENRSLSKGKEKAVEVTETSVDDKARVEAIIRRALENGKALVGEEPQTQIEGFNSEILELVAPKKLMIFELKWPTEVPPLELLAIKNALQEAEDEEEVEEELQIDDQVIVVAARQCACCGLKSF 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04491 441 Gene3D - 32 151 - -
Tsu02g04491 441 CDD CYCLIN 45 143 IPR013763 -
Tsu02g04491 441 Pfam Cyclin, N-terminal domain 18 150 IPR006671 -
Tsu02g04491 441 SUPERFAMILY Cyclin-like 15 150 IPR036915 -
Tsu02g04491 441 Gene3D - 25 244 - -
Tsu02g04491 441 Coils Coil 399 422 - -
Tsu02g04491 441 PANTHER CYCLINS 5 399 IPR039361 -
Tsu02g04491 441 Coils Coil 219 239 - -
Tsu02g04491 441 Pfam Cyclin, C-terminal domain 153 245 IPR004367 -
Tsu02g04491 441 PANTHER CARBOXY-TERMINAL DOMAIN CYCLIN 5 399 - -
Tsu02g04491 441 SMART Cyclin_C_2 153 281 IPR004367 -
Tsu02g04491 441 SUPERFAMILY Cyclin-like 133 248 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04491 Tsu-Chr2 53784155 53818750 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04491 17 235 Core Cell Cycle Gene Families AT4G03270 30.603 1.30e-20 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04491 K18812 - aprc:113855478 259.61