Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04487 ATGGCACCCTCACACATGCAAAACTACTACTACAACACCACCGACGATGACAACGACGATGTTAACTACAACGTCGTGTACGAGGATGATGAAGACGAGGATGAGTATATGCAGGAAgacgaaaaagaagaaatcgaggccaaaaccaaaaccaaaaccaacaACATTATTTTCAATGAATCTTCATCACGTTGTTCATCATTTTCATTGAGTAGAGTATTACTTGACCCAAGAGGAAGATGGGTTGAAGAATGGAACCgggtttttcttttagtacATGCAATGGGTTTATTTGTAGACCCATTATTTTTCTACACTTTGTCTATAAATGACACGTGTATGTGTCTGTTTATTGACGGTTGGTTACTTATTACCGTCACCGTTATCCGTTGCATGACGGACGCGTTACATTTATGGAATATTTGGTTACAGTTGTATATTGAGAAACGCTCCTCTTTTGGATTTGTTCATCGTACTACTCGTCCTCGTACTTCTTCTTCGTCACATGTTTTTCCTTACTTCAAATCTAATAAgggatttttctttgatatctTTGTCATCCTCCCTCTTCCTCagATTGTGTTATGGGTGACAATTCCATCTATGTTAAAAGAAGGATCAATTACAAGGGTGATGGCTGCATTGTTGACTATGTTCTTGTTTCAATACCTTCCTAAAATTTTTCACTCAGTCAACTTCGTGCGTCGCAAACTCGCAGCTGGTTACATTTTTGGAACCATTTGGTGGGGATTTGCTCTCAACATGATCGCTTATTTTGTCGCTTCCCATGCAGCAGGGGCATGTTGGTATTTGTTGGGACTTCAAAGGGGAATGAACTGTCTAGAAGAGCAATGTGAGACAACAACAGGTTGTGGTTTGAGAACAATGTGTTGCAAAGAACCAATATACTATGGAAGCTATAGCATGATGAAGAAATTAGAGAAAACAAGGTTGATATGGGCACATAACAATGAAGCAAGGTTTACATGTTTAGATAGTGCTGACAACTATGAATATGGAGTTTATGAATGGAGTGTGCAACTTTTAACAAATAATAGTCGATTGGAAAAGATGCTCCTCCCTATCTTTTGGGGGTTAATGACTCTTAGCACTTTTGGGAACCTCCAGAGCACAACAGAAAGGATGGAAACCGTTTTCAACATTATTGTGTTGACCAGTGGCCTCCTTCTAGTCACTATGCTAATTGGAAACATCAAGGTATTTTTACATGCTACAACATCGAAGAAGCGAGAGATgaaattgaagatgaagaacattGAATGGTGGATGAACAAAAGACGCTTGCCACAAGGGCTACGACAACGTGTACGTAACTACGAGAGACAATGTTGGGCTGCAATGCGCGGGGTTGATGAATGTCAGTTAATCAAAAACCTCCCTGAGGGTTTGAGAAGGGACATCAAGTACCATCTTTGTTTGGGTTTGGTGAGACAGGTGCCATTATTTCAGCATATGGATGAATTGGTGCTAGAGAACATTTGTGACCGTGTCAAGTCCCTTGTATTCACAAAGGGAGAAACACTAACAAGAGAGGGAGATCCAGTTCAAAGAATGTTATTTGTAGTAAGGGGTCACCTTCAAAGTAGCCAAGTCCTAAGAGATGGAGTAAAAAGTTGTTGCATGTTAGGGCCAGGAAACTTTAGTGGTGATGAGCTTCTTTCATGGTGTTTAAGAAGGCCATTTATACCACGCCTtccaacatcatcatcaacttTGGTCACACTTGAAACAACAGAGGTATTTGGACTTGAAGCTGAGGATGTCAAATATGTCACACAACATTTTAGGTACACATTTACAAAGGAGAATGTTAGGAGAAGTGTTAGATATTACTCACCTGGTTGGAGAACTTGGGCTGCTGTGGCAATTCAATTGGCTTGGAGAAGGTATAGACATAGATTGACTTTGACTTCTCTGTCTTTTATTAGGCCTCGTAGACCTTTATCAAGGTCTACATCTATGGATGAGGATAGACTTCGCCTTTATACGGCTTTGTTAACCTCACCAAAGCCTAATCAAGATGATTTTGACTCTTCATAA 2061 0.3794 MAPSHMQNYYYNTTDDDNDDVNYNVVYEDDEDEDEYMQEDEKEEIEAKTKTKTNNIIFNESSSRCSSFSLSRVLLDPRGRWVEEWNRVFLLVHAMGLFVDPLFFYTLSINDTCMCLFIDGWLLITVTVIRCMTDALHLWNIWLQLYIEKRSSFGFVHRTTRPRTSSSSHVFPYFKSNKGFFFDIFVILPLPQIVLWVTIPSMLKEGSITRVMAALLTMFLFQYLPKIFHSVNFVRRKLAAGYIFGTIWWGFALNMIAYFVASHAAGACWYLLGLQRGMNCLEEQCETTTGCGLRTMCCKEPIYYGSYSMMKKLEKTRLIWAHNNEARFTCLDSADNYEYGVYEWSVQLLTNNSRLEKMLLPIFWGLMTLSTFGNLQSTTERMETVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKREMKLKMKNIEWWMNKRRLPQGLRQRVRNYERQCWAAMRGVDECQLIKNLPEGLRRDIKYHLCLGLVRQVPLFQHMDELVLENICDRVKSLVFTKGETLTREGDPVQRMLFVVRGHLQSSQVLRDGVKSCCMLGPGNFSGDELLSWCLRRPFIPRLPTSSSTLVTLETTEVFGLEAEDVKYVTQHFRYTFTKENVRRSVRYYSPGWRTWAAVAIQLAWRRYRHRLTLTSLSFIRPRRPLSRSTSMDEDRLRLYTALLTSPKPNQDDFDSS 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04487 686 ProSiteProfiles cAMP/cGMP binding motif profile. 488 567 IPR000595 -
Tsu02g04487 686 Pfam Cyclic nucleotide-binding domain 508 596 IPR000595 -
Tsu02g04487 686 MobiDBLite consensus disorder prediction 1 20 - -
Tsu02g04487 686 Gene3D Jelly Rolls 486 604 IPR014710 -
Tsu02g04487 686 SUPERFAMILY Voltage-gated potassium channels 76 409 - -
Tsu02g04487 686 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 6 682 - -
Tsu02g04487 686 SUPERFAMILY cAMP-binding domain-like 414 602 IPR018490 -
Tsu02g04487 686 CDD CAP_ED 488 594 IPR000595 -
Tsu02g04487 686 MobiDBLite consensus disorder prediction 1 22 - -
Tsu02g04487 686 Gene3D Helix hairpin bin 413 479 - -
Tsu02g04487 686 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 6 682 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04487 Tsu-Chr2 53755957 53761321 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04487 59 684 Ion Channels AT5G54250 72.828 0.0 952
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04487 K05391 - gmx:100800795 1014.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04487 02 53755957 53761321 Tsu02g04487 02 53755957 53761321 ECH