Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04482 ATGATGTTGACACCTTCACCATCTGCTATTGCAAGAAGCTCTTTAGAAGAGATGCTTGATTCGCTTCGTCGGAGAGACGAAGAGGAGAACCCTAAAGACCTACCTCCGGCATTGCCATCAAGGCCTATGTCAAGAGGCCGAGTGCCGTCGGCGAGAAGGTCTTTGCCTAAAAGCTTTAAGGATGATggagaaaatgaaaaggaaaaatttGGGCATAAAAGGAAAGGAAGTTTTGGAAGCAAGAAGTTAATGTTGGATGTGGAATCTCCTTatgttgttgtttcagaagagaATACTGTTGTTACTACTAGTGAACAACAACCTTCACCTGGTCCTGTTTCTTCAATTCCTGCTGATGATTCTTCTGTTGCTCCACTTTCTCCGGAATTGCAAGATGACAATGTTTCTTATTTCATCAAAAAGAAACTTCATGTTTGGTGTAGGCAACCAAAAGGGAAGTGGGGACTGGGAACAATACAGTCAACTTCGGGAGAACAAGCATCTGTTTCACTCTCAAATGGAAATGTTATGGAAGTGGCCAGAACAGAACTCCTACCAGCCAATCCTGATATTTTAGAGGGTGTGGATGATCTTATACAGCTCAGCTATTTGAATGAGCCCTCGGTTCTTCACAATCTTCGGTTTAGATATTCTCAAGATTTGATTTATAGTAAAGCTGGGCCAATTTTAATTGCGCTCAATCCCTTCAAAGATGTACCGGTTTACGGAAACGAATATGTCGCTGCTTATAGGAATAAATCTCTTGATAGTCCTCACGTTTATGCAATGGTAGATGCAGCTTATAATGAGATGATAGGAGAAGAAGTAAATCAGTCCATTATCATAAGTGGCGAGAGTGGAGCTGGGAAGACAGAAACAGCAAAAATTGCGATGCAATACTTAGCTGCTCTTGGTGGTGGCAGTTGTGGGATAGAAAATGAAGTTCTTCAGACAAATGTTATACTAGAAGCTTTTGGCAATGCAAAAACATCTAGGAACGACAACTCTAGTAGATTTGGAAAGTTGATTGAAATTCATTTCAGCGCAACGGGTAAAATGTGTGGGGCTAAAATTCAAACCTTTCTATTAGAAAAGTCAAGAGTTGTTCAACTGGCTGATGGCGAGAGGTCTTATCACATATTTTATCAACTTTGTGCTGGAGCTTCGACTCATCTTAAAGAGAAACTAAATCTTAAAGCGGCCAGTGAATATAAATATCTTAATCAAAGCGACTGCATGGCAATTGATGGTGTCGATGACGCTAAAAAGTTTCATAGGCTGATGAAAGCCTTGGATGTCGTTCAAATGAGCAAAGAGGATCAAGAACGTGTCTTTAAGTTGCTTGCTGCGATATTATGGCTGGGAAATATATCTTTCGAAGTTAAAGATAATGAAAATCACATTGAAGTGGTGAACGACGAAGCTGTAACCAGTGCTGCTTCACTGATGGGTTGCAGTCCTGAGGGACTAATGACAGTATTATCTACTCATAAAATCAAAGCTGGCAAGGATACTATCACCAAAACATTGACATTGCGGCAGGCAATTGATGCAAGAGATGCATTAGCAAAATTTATCCATGCAAGCTTGTTTGACTGGTTAGTAGATCAAGTTAACAAGTCGCTTGAAGTGGGTAAACGACGTACTGGAAGATCCATAAGTATCCTCGATATTTACGGGTTTGAGTCATTCCAGAAAAACAGCTTTGAACAGTTATGCATAAACTATGCCAATGAGAGGCTTCAACAACATTTCAATCGGCATCTGTTTAAGCTGGAGCAGCAGGACTATGAAATAGACGGCGTTGATTGGACCAAAGTAGATTTTGAGGACAATCAAGAGTGTTTGGACCTCATTGAGAagAAGCCTATAGGGCTACTCTCTCTGTTGGACGAGGAATCAAATTTTCCAAGGGCCACTGATCTAACACTTGCCAACAAACTCAAGCAGCACCTGCAAACTAATCCTTGCTTCAAAGGGGACTGGGGAAGAGGTTTCAGTGTTTCTCATTATGCAGGCGAGGTTTTGTATGATACAACTGGCTTTCTAGAAAAGAACAGAGATCCAATGCCTTCCGATTCCATTCAACTACTATCATCATGTAGTTGCGAACTGCTGCAATCGTTCTGCATGACGCTTAACCACCAGCCTCAGAAGCAATCAAATTTTCAGCACACAGGTGCTTTTGATTCGCAAAAGCAGAGTGTTGGCACAAAGTTCAAGGGTCAACTATTCAAGTTAATGCATCAGTTGGAGAGCACAACGCCTCACTTTATTCGTTGTATAAAGCCAAATTCAAAGCAGCATCCTCGCATGTATGATGAAGATCTTGTTCTCCAGCAACTAAAGTGTTGTGGAGTTTTGGAGGTTGTTAGAATTTCCAGGGCTGGATATCCTACTCGAATGACACATCAAGAGTTTGCCAGAAGGTACGGCTTCCTGCTCTATGAGGCCAACACGTCTCAAGATCCGTTGAGTATCTCGGTTGCTGTTTTGCAACAGTTTAATATCCCTCCTGAAATGTACCAAGTTGGCTTCACCAAACTGTATCTTCGAACAGGGCAGGTTGGTGCACTCGAGGATAAGAGAAAACTGGTTGTGCAGGGAATTTTTGGGGTTCAAAAATGGGTTCGTGGTTATCAAGCTCGCAGGCGTTACAATAAACTTAAGAAAGGAGCGACCATTTTACAATCATTTGTTCGTGGAGAAATTGCGAGAAGGAAATATGGTGTTATGGTGAAGTCTTCTATAACTATTTCTTCTGAAAATATCGAGGAGATACAGGCTATCATAACACTACAATCTGTAATTCGTGGATGGTTGGTTCGAAAGCATAATGGTAGCTTGAATAAGCTTAAGAAACATCCTGAGAATGGAAGATCTAAGCGAAGGTCACGTTCGAAGACGTCATTCGACAAGGATGCGAAAGATCGGGTCCAAAATCTGCCTTCGGCTTTAGCAGAACTCCAAAGGCGGGTTGTCAAGGCCGAAGCAACTATAGAGCAAAAAGAAGCGGAAAATGCTGAGTTGAGGGAAcggctaaaacaatatgagaaAAGGTGGATTGAATACgagaaaaagatgaaaacaaTGGAGGAAATGTGGCAAAGACAAATGTCATCTTTGCAAATGAGTCTTGCTGCTGCTAAAACCAGCCTTGCTTCTGAGAATGCCAATGGTCAACCTTCAAGACACGATGTAGCAATACCATCGGCTTTCTGTTATGATTCCGAGGACGCTGTTTCGATGGGATCTCGAACGCCTCGAACACCCGGTTGCAGCACACCTATGAAGTATTCTAGTAGTCTTTCTGAAGTCAGAGCAGCGAGAGACGGTAACGATAACGGTGCAATTAACAATCTGATGAAAGAGTTCGAGCAGCGCAGACAGACATTCGATGAGGATGCAAGAGCTTTGGTTGAAGTTAAACCAACAGGGCAATCTGCAAATCCGAATAACATTGATGAACTGAGAAAACTCAAACACAAGTTTGAAGGGTGGAAGAAAGAATACAAGACGCGGTTAAGagagacaaaaacaagaattaagTTAGGGAATTCGGAAATGGATAGAAACCGACGAAAATGGTGGGGGAAATTGAGCTCTAGAGTACACCAATAA 3621 0.4087 MMLTPSPSAIARSSLEEMLDSLRRRDEEENPKDLPPALPSRPMSRGRVPSARRSLPKSFKDDGENEKEKFGHKRKGSFGSKKLMLDVESPYVVVSEENTVVTTSEQQPSPGPVSSIPADDSSVAPLSPELQDDNVSYFIKKKLHVWCRQPKGKWGLGTIQSTSGEQASVSLSNGNVMEVARTELLPANPDILEGVDDLIQLSYLNEPSVLHNLRFRYSQDLIYSKAGPILIALNPFKDVPVYGNEYVAAYRNKSLDSPHVYAMVDAAYNEMIGEEVNQSIIISGESGAGKTETAKIAMQYLAALGGGSCGIENEVLQTNVILEAFGNAKTSRNDNSSRFGKLIEIHFSATGKMCGAKIQTFLLEKSRVVQLADGERSYHIFYQLCAGASTHLKEKLNLKAASEYKYLNQSDCMAIDGVDDAKKFHRLMKALDVVQMSKEDQERVFKLLAAILWLGNISFEVKDNENHIEVVNDEAVTSAASLMGCSPEGLMTVLSTHKIKAGKDTITKTLTLRQAIDARDALAKFIHASLFDWLVDQVNKSLEVGKRRTGRSISILDIYGFESFQKNSFEQLCINYANERLQQHFNRHLFKLEQQDYEIDGVDWTKVDFEDNQECLDLIEKKPIGLLSLLDEESNFPRATDLTLANKLKQHLQTNPCFKGDWGRGFSVSHYAGEVLYDTTGFLEKNRDPMPSDSIQLLSSCSCELLQSFCMTLNHQPQKQSNFQHTGAFDSQKQSVGTKFKGQLFKLMHQLESTTPHFIRCIKPNSKQHPRMYDEDLVLQQLKCCGVLEVVRISRAGYPTRMTHQEFARRYGFLLYEANTSQDPLSISVAVLQQFNIPPEMYQVGFTKLYLRTGQVGALEDKRKLVVQGIFGVQKWVRGYQARRRYNKLKKGATILQSFVRGEIARRKYGVMVKSSITISSENIEEIQAIITLQSVIRGWLVRKHNGSLNKLKKHPENGRSKRRSRSKTSFDKDAKDRVQNLPSALAELQRRVVKAEATIEQKEAENAELRERLKQYEKRWIEYEKKMKTMEEMWQRQMSSLQMSLAAAKTSLASENANGQPSRHDVAIPSAFCYDSEDAVSMGSRTPRTPGCSTPMKYSSSLSEVRAARDGNDNGAINNLMKEFEQRRQTFDEDARALVEVKPTGQSANPNNIDELRKLKHKFEGWKKEYKTRLRETKTRIKLGNSEMDRNRRKWWGKLSSRVHQ 1206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04482 1206 PRINTS Myosin heavy chain signature 320 347 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tsu02g04482 1206 PRINTS Myosin heavy chain signature 552 580 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tsu02g04482 1206 PRINTS Myosin heavy chain signature 605 633 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tsu02g04482 1206 PRINTS Myosin heavy chain signature 223 242 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tsu02g04482 1206 PRINTS Myosin heavy chain signature 277 302 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tsu02g04482 1206 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 140 189 IPR004009 GO:0003774|GO:0005524|GO:0016459
Tsu02g04482 1206 ProSiteProfiles IQ motif profile. 868 894 IPR000048 GO:0005515
Tsu02g04482 1206 MobiDBLite consensus disorder prediction 99 127 - -
Tsu02g04482 1206 MobiDBLite consensus disorder prediction 17 34 - -
Tsu02g04482 1206 MobiDBLite consensus disorder prediction 963 977 - -
Tsu02g04482 1206 MobiDBLite consensus disorder prediction 1 77 - -
Tsu02g04482 1206 ProSiteProfiles IQ motif profile. 926 955 IPR000048 GO:0005515
Tsu02g04482 1206 CDD MYSc_Myo8 207 852 IPR036022 -
Tsu02g04482 1206 MobiDBLite consensus disorder prediction 99 116 - -
Tsu02g04482 1206 Gene3D Myosin VI head, motor domain, U50 subdomain 433 541 - -
Tsu02g04482 1206 Gene3D - 376 432 - -
Tsu02g04482 1206 PANTHER MYOSIN-2 ISOFORM X1 58 1203 - -
Tsu02g04482 1206 ProSiteProfiles Myosin motor domain profile. 193 864 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tsu02g04482 1206 Pfam IQ calmodulin-binding motif 891 909 IPR000048 GO:0005515
Tsu02g04482 1206 Pfam IQ calmodulin-binding motif 928 945 IPR000048 GO:0005515
Tsu02g04482 1206 Pfam IQ calmodulin-binding motif 873 886 IPR000048 GO:0005515
Tsu02g04482 1206 Gene3D - 798 866 - -
Tsu02g04482 1206 Gene3D - 564 754 - -
Tsu02g04482 1206 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 145 913 IPR027417 -
Tsu02g04482 1206 SMART MYSc_2a 187 865 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tsu02g04482 1206 Gene3D - 872 916 - -
Tsu02g04482 1206 ProSiteProfiles IQ motif profile. 889 918 IPR000048 GO:0005515
Tsu02g04482 1206 PANTHER MYOSIN 58 1203 - -
Tsu02g04482 1206 SMART iq_5 865 887 IPR000048 GO:0005515
Tsu02g04482 1206 SMART iq_5 925 947 IPR000048 GO:0005515
Tsu02g04482 1206 SMART iq_5 888 910 IPR000048 GO:0005515
Tsu02g04482 1206 Coils Coil 986 1034 - -
Tsu02g04482 1206 Pfam Myosin head (motor domain) 195 852 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tsu02g04482 1206 MobiDBLite consensus disorder prediction 950 977 - -
Tsu02g04482 1206 Gene3D Kinesin motor domain 192 797 IPR036961 -
Tsu02g04482 1206 MobiDBLite consensus disorder prediction 54 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04482 Tsu-Chr2 53688879 53698666 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04482 1 1199 Myosins gene family AT5G54280 61.743 0.0 1530
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04482 K10357 - gmx:100819335 1862.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04482 02 53688879 53698666 Tsu02g04482 02 53688879 53698666 ECH