Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04480 ATGTTTAGGGAGTATGCTATCAATGTAATTTCTGATACTTTGACCGTAACCTTTATTCCTTTGCATGGTTCGGTTGCTTTTGTAAATGCAATTGAAGTTGTGCAGATGCCATATGACTTGTTTGTCGATCAGGCATTGTCGCTTAATCGATTTGCCCCTTTTGTTAGTGGCCTTTCGGAACGTGCTTTTGAAACCGTTTATCGACTGAACATAGGAGGAACCTTGCTCAGTGCCGAAAACGACACATTGGGAAGGACTTGGGAGAATGATCAGAAGTACCTCCATGTGAACAGCTCGGTCGCTAATGTCTCGGTTAACCCTTCTAGAATTAGGTATCCATTGGACTATAATGCTGAGATGGCACCTAATTGGGTTTATGCCACTGCTGTTGCAATGGGGAGTGCCATCAATCCAAATTTCAACATTTCTTGGGTCTTTGATGTGGATCCACGTTTCTCCTATTATGTCCGGCTTCACTTTTGCGATATCATTAGCAAGGAAATGAATAAGTTAATTTTCAATGTATTCATAAATACTGATATTGCTATTGCAAGATTTAACCTATCAGGGACGAATATTTTGGCTGTGCCTTACCACAAGGATTTTATTTCCAATGCCTCATCGGATAACACTTTGACGGTAAGCGTTGGTCCTGATGCATTGTCAGACAGTAAAAATGCAATTATGAATGAGTTGGAGATAATGAAAATCTGCAATGCTTTGAAGAGCTTAGATGGAAGTGGAAGTGATGGAAGTGGAAGTAGCAATAAGCACATAATAGTTGTCATTGTCGTCGTCGTCGTTGTCAAATTAACTTTGTTTGTTCTTCTCTTTGCGGGGATTCCATACTacaggaaaaagaaaaagttaccTGGAGAGAATTCCGAAGACGACATTGTTTTGGAGAATTTAGCCAGTATGCCGATCCGTTTCGGCTATAAAGATCTTGAAGTTGCAACTAATAACTTTTCAATGAAGCTTGGTCAAGGAGGTTTCGGATCAGTTTATAAAGGAGTTCTACCTGATGGGACTCAATTAGCTGTGAAGCAACTAGAAGGCATTGGTCAAGGAAAGAAAGAGTTTAGAGCTGAAATTAACATCATTGGTAGCATTCATCACCTTAATTTGGTAAGGCTTAAAGGATTTTGTGCCGATGGAACTCATAGGCTTCTAGTTTACGAGTATATGGCTAATAACTCATTAGATAAATGGAtattcaagaagaaaaaaagtgaatttcttTTGGATTGGGATACAAGGTTTAATATAGCATTAGGAACAGCAAAAGGGCTAGCTTATTTACATGAAGAATGTGACTCAAAGATTGTTCATTGTGACATCAAGCCTGAAAATATACTTCTAGATGATCATTTCGTTGCCAAAGTTTCAGATTTTGGTTTAGCTAAGCTCATGACTAGACAACAAAGCCATGTTTTCACAACACTAAGAGGAACAAGAGGGTACTTAGCACCTGAGTGGATAAGAAACTGTCCTATATCAGAGAAAAGTGATGTATACAGCTATGGGATGGTTTTGCTAGAGATAATTagtggaagaaaaaattatgaTCCTAATGAGACTTCAGAGAAATTCAATTTTCCTTGTTTTGCTTTTAAGATGATGGAAGAAGGGAAAGTGAGAGATATAGTTGATTCAGAGTTGAAAATAGATTATGAGCATTATGATAAGGTTCATTGTGCTATAAGTGTTGCATTGTGGTGTATACAAGAAAACATGTCTATGAGACCTTCCATGACAAGAGTTGTTCAAATGTTAGAGGGTCTTTGCACTGTTCCTAAACCACCAAAATCCTCCAATCATGGGAACACCTCTTCTGATTCCTATCTATCAGCAGTTAGTCTGTCAGGTCCAAGATAG 1878 0.3727 MFREYAINVISDTLTVTFIPLHGSVAFVNAIEVVQMPYDLFVDQALSLNRFAPFVSGLSERAFETVYRLNIGGTLLSAENDTLGRTWENDQKYLHVNSSVANVSVNPSRIRYPLDYNAEMAPNWVYATAVAMGSAINPNFNISWVFDVDPRFSYYVRLHFCDIISKEMNKLIFNVFINTDIAIARFNLSGTNILAVPYHKDFISNASSDNTLTVSVGPDALSDSKNAIMNELEIMKICNALKSLDGSGSDGSGSSNKHIIVVIVVVVVVKLTLFVLLFAGIPYYRKKKKLPGENSEDDIVLENLASMPIRFGYKDLEVATNNFSMKLGQGGFGSVYKGVLPDGTQLAVKQLEGIGQGKKEFRAEINIIGSIHHLNLVRLKGFCADGTHRLLVYEYMANNSLDKWIFKKKKSEFLLDWDTRFNIALGTAKGLAYLHEECDSKIVHCDIKPENILLDDHFVAKVSDFGLAKLMTRQQSHVFTTLRGTRGYLAPEWIRNCPISEKSDVYSYGMVLLEIISGRKNYDPNETSEKFNFPCFAFKMMEEGKVRDIVDSELKIDYEHYDKVHCAISVALWCIQENMSMRPSMTRVVQMLEGLCTVPKPPKSSNHGNTSSDSYLSAVSLSGPR 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04480 625 SUPERFAMILY Protein kinase-like (PK-like) 300 593 IPR011009 -
Tsu02g04480 625 Pfam Malectin-like domain 3 237 IPR024788 -
Tsu02g04480 625 ProSiteProfiles Protein kinase domain profile. 321 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g04480 625 CDD STKc_IRAK 327 595 - -
Tsu02g04480 625 Gene3D - 62 238 - -
Tsu02g04480 625 ProSitePatterns Serine/Threonine protein kinases active-site signature. 442 454 IPR008271 GO:0004672|GO:0006468
Tsu02g04480 625 Pfam Protein kinase domain 324 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g04480 625 ProSitePatterns Protein kinases ATP-binding region signature. 327 349 IPR017441 GO:0005524
Tsu02g04480 625 MobiDBLite consensus disorder prediction 602 625 - -
Tsu02g04480 625 SMART serkin_6 321 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g04480 625 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 220 610 - -
Tsu02g04480 625 Gene3D Transferase(Phosphotransferase) domain 1 396 598 - -
Tsu02g04480 625 MobiDBLite consensus disorder prediction 600 625 - -
Tsu02g04480 625 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 220 610 - -
Tsu02g04480 625 Gene3D Phosphorylase Kinase; domain 1 286 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04480 Tsu-Chr2 53667895 53669772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04480 3 593 Receptor kinase-like Gene Family AT4G39110 38.019 1.36e-125 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Tsu02g04480 Pkinase 1.3e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04480 - - gmx:100782258 583.948