Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04479 ATGAACCCTCCTTTTTGCCCTTACTGCAACATTCCCTCTTATTCCTTAACAACTCCATTAGAATATATGTGCAGAACCTGCCTTATCAATGCTGCAATCTTTGCTAGGAGCTTCGCAATAGAGTTTGACATTTTGATGCAGCGAAATCGACAATTGATGGCAGAAAAGCAACATCTGGTGGCAGAAAACTTGAGAGTATTTGCATCTTCCTCGTCACAAATCCAAAAAGAAAAAGATCCCAGATATAAGACAGATTTATGCGAGAAGTGGGAGAAGAATACAGAGTGTGAATATGGAGAAAAATGTATATTCGCCCATGGCATTGGCGAGCTAAGAGACAAAGAAATTTGCATTGTGTTCCAAGACACTGGAAACTGCCCAAGAGCGAACTTCTGTCCTTTTCGTCACTAG 411 0.4088 MNPPFCPYCNIPSYSLTTPLEYMCRTCLINAAIFARSFAIEFDILMQRNRQLMAEKQHLVAENLRVFASSSSQIQKEKDPRYKTDLCEKWEKNTECEYGEKCIFAHGIGELRDKEICIVFQDTGNCPRANFCPFRH 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04479 136 SUPERFAMILY CCCH zinc finger 80 112 IPR036855 GO:0046872
Tsu02g04479 136 Gene3D - 75 114 - -
Tsu02g04479 136 PANTHER CCCH ZINC FINGER/TIS11-RELATED 54 136 IPR045877 GO:0003729
Tsu02g04479 136 ProSiteProfiles Zinc finger C3H1-type profile. 81 109 IPR000571 GO:0046872
Tsu02g04479 136 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 82 107 IPR000571 GO:0046872
Tsu02g04479 136 ProSiteProfiles Zinc finger C3H1-type profile. 111 136 IPR000571 GO:0046872
Tsu02g04479 136 SMART c3hfinal6 112 136 IPR000571 GO:0046872
Tsu02g04479 136 SMART c3hfinal6 81 108 IPR000571 GO:0046872
Tsu02g04479 136 PANTHER PROTEIN TIS11 54 136 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04479 83 136 C3H Transcription Factor Family AT1G68200 43.548 4.05e-11 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tsu02g04479 zf-CCCH 2.6e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04479 K18753 - cscu:111620870 69.707