Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tsu02g04479 | ATGAACCCTCCTTTTTGCCCTTACTGCAACATTCCCTCTTATTCCTTAACAACTCCATTAGAATATATGTGCAGAACCTGCCTTATCAATGCTGCAATCTTTGCTAGGAGCTTCGCAATAGAGTTTGACATTTTGATGCAGCGAAATCGACAATTGATGGCAGAAAAGCAACATCTGGTGGCAGAAAACTTGAGAGTATTTGCATCTTCCTCGTCACAAATCCAAAAAGAAAAAGATCCCAGATATAAGACAGATTTATGCGAGAAGTGGGAGAAGAATACAGAGTGTGAATATGGAGAAAAATGTATATTCGCCCATGGCATTGGCGAGCTAAGAGACAAAGAAATTTGCATTGTGTTCCAAGACACTGGAAACTGCCCAAGAGCGAACTTCTGTCCTTTTCGTCACTAG | 411 | 0.4088 | MNPPFCPYCNIPSYSLTTPLEYMCRTCLINAAIFARSFAIEFDILMQRNRQLMAEKQHLVAENLRVFASSSSQIQKEKDPRYKTDLCEKWEKNTECEYGEKCIFAHGIGELRDKEICIVFQDTGNCPRANFCPFRH | 136 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tsu02g04479 | 136 | SUPERFAMILY | CCCH zinc finger | 80 | 112 | IPR036855 | GO:0046872 | |
Tsu02g04479 | 136 | Gene3D | - | 75 | 114 | - | - | |
Tsu02g04479 | 136 | PANTHER | CCCH ZINC FINGER/TIS11-RELATED | 54 | 136 | IPR045877 | GO:0003729 | |
Tsu02g04479 | 136 | ProSiteProfiles | Zinc finger C3H1-type profile. | 81 | 109 | IPR000571 | GO:0046872 | |
Tsu02g04479 | 136 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 82 | 107 | IPR000571 | GO:0046872 | |
Tsu02g04479 | 136 | ProSiteProfiles | Zinc finger C3H1-type profile. | 111 | 136 | IPR000571 | GO:0046872 | |
Tsu02g04479 | 136 | SMART | c3hfinal6 | 112 | 136 | IPR000571 | GO:0046872 | |
Tsu02g04479 | 136 | SMART | c3hfinal6 | 81 | 108 | IPR000571 | GO:0046872 | |
Tsu02g04479 | 136 | PANTHER | PROTEIN TIS11 | 54 | 136 | - | - |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tsu02g04479 | 83 | 136 | C3H Transcription Factor Family | AT1G68200 | 43.548 | 4.05e-11 | 57.4 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Tsu02g04479 | zf-CCCH | 2.6e-06 | CL0537 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tsu02g04479 | K18753 | - | cscu:111620870 | 69.707 |