Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04457 ATGGAAAGCACCGATTCATCGACCGGTTCGCAACAACCGAATCTACCACCTGGATTCCGATTCCACCCGACCGATGAAGAACTTGTTGTTCATTATCTCAAGAAAAAAGCAGCTTCAGCTCCTTTACCGGTAGCCATCATCGCCGAAGTTGATCTCTACAAATTCGATCCATGGGAGTTACCGGCTAAGGCAACGTTTGGAGAGCAAGAGTGGTATTTCTTTAGTCCAAGGGATAGGAAGTATCCAAATGGTGCTAGGCCAAACAGGGCAGCAACTTCTGGTTATTGGAAAGCAACTGGTACTGATAAGCCCGTTTTAACTTCTGGTGGAACACAAAAAGTTGGTGTGAAAAAAGCTTTGGTTTTCTATGGTGGAAAACCACCAAGAGGAATTAAAACTAATTGGATCATGCATGAGTATAGGCTTGCTGATAATAAGCCTAATAATAGGCCTCCTGGTTGTGACTTGGGCAACAAGAAAAACTCTCTAAGGctTGATGATTGGGTGCTATGCCGAATCTACAAGAAAAGCAACACACATCGGTCACCGGTGGAACATGATAGGGAAGATTCCATGGATGATATGATAGGCGGAGTACCTCCATCGATCAACGTGGGTCAAATGAATGCTGCAAGGTTTCATCATTTTTCAAAGATGTCAACAAATAGCTACAACAATGCATTGTTGGAAAATGATCAAAATTTATTAGAAGGAATGATGTTAAGCAACAACAATTTAGGAGTTTCAAATTCAAAGGCAGAGTTATCTTTTGTACCAACTCTGACAACATCTTCAAATGCTAATTCACCTTCAAAAAGAACACTTTCTTCACTTTATAATTGGAATGATGAAGATGTTGCAGCTCAAGTTGGTacttcatcatcaaacaaaagGTTCAATTTAGAAAGTGTTGTGAGAAATGATCAAGAGAATGGAACCGTCGCAACTTCTTTCGCTTCGCTTCTTAATAATCTCCCTCAAACTCCTTCAttgcatcaacaacaacaacaaacaatgTTGGGATCAATACCATATCAAATTCAAGGGATGAATTGGTATGGATAA 1065 0.3859 MESTDSSTGSQQPNLPPGFRFHPTDEELVVHYLKKKAASAPLPVAIIAEVDLYKFDPWELPAKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVLTSGGTQKVGVKKALVFYGGKPPRGIKTNWIMHEYRLADNKPNNRPPGCDLGNKKNSLRLDDWVLCRIYKKSNTHRSPVEHDREDSMDDMIGGVPPSINVGQMNAARFHHFSKMSTNSYNNALLENDQNLLEGMMLSNNNLGVSNSKAELSFVPTLTTSSNANSPSKRTLSSLYNWNDEDVAAQVGTSSSNKRFNLESVVRNDQENGTVATSFASLLNNLPQTPSLHQQQQQTMLGSIPYQIQGMNWYG 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04457 354 Pfam No apical meristem (NAM) protein 16 142 IPR003441 GO:0003677|GO:0006355
Tsu02g04457 354 Gene3D NAC domain 24 181 IPR036093 GO:0003677|GO:0006355
Tsu02g04457 354 MobiDBLite consensus disorder prediction 1 20 - -
Tsu02g04457 354 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 332 - -
Tsu02g04457 354 SUPERFAMILY NAC domain 7 176 IPR036093 GO:0003677|GO:0006355
Tsu02g04457 354 ProSiteProfiles NAC domain profile. 15 176 IPR003441 GO:0003677|GO:0006355
Tsu02g04457 354 PANTHER NAC TRANSCRIPTION FACTOR 56 1 332 - -
Tsu02g04457 354 MobiDBLite consensus disorder prediction 1 17 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04457 Tsu-Chr2 53470931 53473199 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04457 1 353 NAC Transcription Factor Family AT3G15510 53.050 7.08e-120 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tsu02g04457 NAM 1.1e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04457 - - gmx:100170710 561.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04457 02 53470931 53473199 Tsu02g04457 02 53470931 53473199 ECH