Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04454 ATGGGAATTCAAGAAAAAGATCCACTTTCACAATTGAGTTTACCACCTGGTTTTAGATTTTACCCAACCGATGAAGAACTTCTTGTTCAATATCTATGTCGTAAAGTAGCTGgtcatcatttttctcttcaaattaTTGCTGAAATTGATCTCTACAAATTTGATCCATGGGTTCTACCAAGTAAGGCAATTTTTGGTGAGAAAGAATGGTATTTTTTTAGTCCAAGAGATAGGAAATATCCTAATGGGACTAGACCAAATAGAGTAGCAGGATCTGGGTATTGGAAAGCTACTGGAACTGATAAGATTATCACAAATGAAGGTAGAAAAGTTGGTATAAAAAAAGCACTTGTTTTCTATGTTGGTAAAGCTCCTAAAGGCTCTAAAACTAATTGGATTATGCATGAGTATCGCCTACTTGATTCTTCTCGCAACAACGGTGGCACTAAGTTAGATGATTGGGTTCTATGTAGAATTTACAAGAAAAATTCAAGCGCACAAAAAACTAATCCAAACGGCGGCGTCGTTTCGAGCGGAGAATACACTCAATACAGCAACGGTTCATCTTCGTCTTCATCCTCCCACCGCGACTCCCACCTCGATGACGTTCTCGAATCACTTCCACAAATCGACGACCGATGCTTCATGCTGCCACGTGTCAATTCACTAAGAACTATGCAACATAATCAACAACAAGAACAGAAACTTAatcttcaaaatctcaattcagCAAATAACAACAATTTCATGGATTGGTCAAATCCATCATCAATTCTCAACACCGTTACAGATCAGTTTCAAGGAGCACAAACTCAAGGAATGATGAATTTTGGTGGATGTAATGACCTTTATGTCCCTAATATATCCACTTTATGTCAAGTGGACTCATCCATTACTACAGATAAAACTAGTAACATACTCGTGCATCCAACTGAAGAGGAGGTTCAAAGTGGGGCAAGAGCGAATCAAGTTGAAAATTCTACTTCTGGATTTTTTCAACGCGGTTCAAATGATCTTACTCAAGGAATGACTTATTCTAATTCGGTTGACCCATTCGGGTTTAGATACCCGATTCAACCAGTTGGATTTGGGTTCGGCCAATGA 1104 0.3741 MGIQEKDPLSQLSLPPGFRFYPTDEELLVQYLCRKVAGHHFSLQIIAEIDLYKFDPWVLPSKAIFGEKEWYFFSPRDRKYPNGTRPNRVAGSGYWKATGTDKIITNEGRKVGIKKALVFYVGKAPKGSKTNWIMHEYRLLDSSRNNGGTKLDDWVLCRIYKKNSSAQKTNPNGGVVSSGEYTQYSNGSSSSSSSHRDSHLDDVLESLPQIDDRCFMLPRVNSLRTMQHNQQQEQKLNLQNLNSANNNNFMDWSNPSSILNTVTDQFQGAQTQGMMNFGGCNDLYVPNISTLCQVDSSITTDKTSNILVHPTEEEVQSGARANQVENSTSGFFQRGSNDLTQGMTYSNSVDPFGFRYPIQPVGFGFGQ 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04454 367 PANTHER NAC DOMAIN-CONTAINING PROTEIN 55 1 337 - -
Tsu02g04454 367 MobiDBLite consensus disorder prediction 165 200 - -
Tsu02g04454 367 SUPERFAMILY NAC domain 10 162 IPR036093 GO:0003677|GO:0006355
Tsu02g04454 367 MobiDBLite consensus disorder prediction 165 194 - -
Tsu02g04454 367 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
Tsu02g04454 367 ProSiteProfiles NAC domain profile. 14 162 IPR003441 GO:0003677|GO:0006355
Tsu02g04454 367 Gene3D NAC domain 23 168 IPR036093 GO:0003677|GO:0006355
Tsu02g04454 367 PANTHER NAC TRANSCRIPTION FACTOR 56 1 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04454 Tsu-Chr2 53413110 53415221 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04454 1 254 NAC Transcription Factor Family AT1G52890 68.627 5.51e-119 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tsu02g04454 NAM 6.9e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04454 - - mtr:MTR_2g079990 593.964
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04454 02 53413110 53415221 Tsu02g04454 02 53413110 53415221 ECH