Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04448 ATGAcatctgaagaaaaaaatgatgttaGTGATTGGCACTTGGAAGCTCTTAAAGATTATGCTTCTGTATGTGTAGATGATGAATATGTTAGTTATTTACCATTTCATGAGCCACAACATGAACCCTTTCCACAAGTCAATAACATTGATGAGTTGGTTCCTTTTGAAGGGCAAATATTTAACAGTGATAATGATGCTTatgatttttattctttatttgcacaaaaaaatggattttcaaTTAGGCGTGATCACGTTTATAAATCTCGTATACACGAGACTGAGCATAATCCATCGGGtatttataaaagagaatttgtTTGTCATCGTGGTGCTATTGTTAAACAACGCAAAATTAATGAAGTGGAAAGTAAAAGAAAACGAAAATCATCAAGATGTAATTGTGTTGCAAAGATGTTGGTGTCCAAGATGACAATTGACTTTGAGGAAAAATGGGTGGTTAAATATTTCAACAATGATCACAATCACGAGTTATTGGATGACAAAGAGGTTCAATTTCTTCCTGCTTATCGCAATATCCCAATTGTTGATCAAACTCGTATCCTATTGTTGTCGAAAGCTGGTTGCTCTATAAGTCTTACAATGAGAGTGCTTGAGTTAGAGAAAGGAATAAGTACAGGTAATCTACCATTTTTAGATAAAGATATTCGAAATTTTATTCAATCTCAAAGTAGTATTGGTAAAGAAAATGATGCTTCCGATATTCTCAAATTATGCAAAAGTTTGAAAGACATTGATGACGACTTCAAATACGAGTTCACTATTGATGAAAATAACAAATTGGAGCATATTATTTGGGCATTTGGTGATTCAATTAGAGCATATGAAACTTTTGGAGATGTCGTAGTTTTTGATACCACATATAGAATAAATCGTTATGATATGCCGCTTGGAATATGGGTTGGTGTTGATAATCACGgaaattcaattttctttggTTGTGTTCTATTGCGAGATGAGAAGATTCCATCTTTCACATGGGCTTTAAAGgTTGGCATTGCTGTCAAAATTAGAAATCAAGCCGGAGAAGAGGCAAGAATGCGTCAAAAGTATCATAATCCACATATTAGAACAAGTTTTCCTATTGAGGAACATGCTGCATCTGTACTGACACCGTATGCCTTTGATTTGCTCCAACATGAGATTGAGTTATCAACAAAATATGCAGCAACTGAAATTGATAATGACTCTTATATTTTGCGACATCATACTAAAGCTGAAGGCGGTCGTCTAAGACGAGAAAGTTCATTGATCCCAAAATCAAGCCATGTAGTCAACTGCAATGGTGGTTCCTCTGCTAAGTTTCAGTCTCTAATTCGACGTTTGGAAGTTGAATCATCAAAgacaaaagaaagagaagaagttGCTACTAGAGAATTAGAAAAAGTTATCAAAGAGATAATAGACATGCCAGAAAGTGAGGAACTTTTGATTGATTTGGAACCTGATATTGATGCAAACAATGATGGTTGTGAAGTTGTAAATCTCATTGTTACAAAAAGCAAAGGTCGGCCAAAAGGATCAAGAGCAAAAGGATCAAGACCAAAAGAAGGAGTTGAAGCTGCAAAGAAGCTTCGTCATTGTCATGTTCCGGGTTGTCGTGCAACTGATCATGACACACGAAATtgtccaaataaaaataaaaatattaaagtatTGCCTTCTCAATCTCCTAATAAGCAGATTTTGGATGGTGTGGTGGTTGTCAATGAATTGATAGATTTGGCTAAGAGAAGGAAAGATAAATATGACATTGTTATATTAGGCGAAGGTAATTGGGATAACCTTTGGTGTATAAAAACTGTATTGAGCAGTTTTGAACTTGTGTCTGGCTTGAAggtaaatttttataaaagtaagcTTTATGGTATCAATCTGGATGATAGTTTTCTGGGTGCGTCGTCGTCGTTTTTGCATTGTGGAGTGGAGTCTATTCCTTTTCGTTTTCTTGGAATACCGGTAGGGGCTAATCCGAGAAGAAGGGCTACTTGGTTACCTATAATAGAAACCATGAAAGACTTTGTGCTTGGAATGGACGTCATTTATCTATAG 2073 0.3338 MTSEEKNDVSDWHLEALKDYASVCVDDEYVSYLPFHEPQHEPFPQVNNIDELVPFEGQIFNSDNDAYDFYSLFAQKNGFSIRRDHVYKSRIHETEHNPSGIYKREFVCHRGAIVKQRKINEVESKRKRKSSRCNCVAKMLVSKMTIDFEEKWVVKYFNNDHNHELLDDKEVQFLPAYRNIPIVDQTRILLLSKAGCSISLTMRVLELEKGISTGNLPFLDKDIRNFIQSQSSIGKENDASDILKLCKSLKDIDDDFKYEFTIDENNKLEHIIWAFGDSIRAYETFGDVVVFDTTYRINRYDMPLGIWVGVDNHGNSIFFGCVLLRDEKIPSFTWALKVGIAVKIRNQAGEEARMRQKYHNPHIRTSFPIEEHAASVLTPYAFDLLQHEIELSTKYAATEIDNDSYILRHHTKAEGGRLRRESSLIPKSSHVVNCNGGSSAKFQSLIRRLEVESSKTKEREEVATRELEKVIKEIIDMPESEELLIDLEPDIDANNDGCEVVNLIVTKSKGRPKGSRAKGSRPKEGVEAAKKLRHCHVPGCRATDHDTRNCPNKNKNIKVLPSQSPNKQILDGVVVVNELIDLAKRRKDKYDIVILGEGNWDNLWCIKTVLSSFELVSGLKVNFYKSKLYGINLDDSFLGASSSFLHCGVESIPFRFLGIPVGANPRRRATWLPIIETMKDFVLGMDVIYL 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04448 690 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 51 338 IPR031052 GO:0006355
Tsu02g04448 690 MobiDBLite consensus disorder prediction 509 528 - -
Tsu02g04448 690 PANTHER FAR1 DNA BINDING DOMAIN, ZINC FINGER, SWIM-TYPE, MULE TRANSPOSASE DOMAIN, FHY3/FAR1 FAMILY-RELATED 342 417 - -
Tsu02g04448 690 PANTHER FAR1 DNA BINDING DOMAIN, ZINC FINGER, SWIM-TYPE, MULE TRANSPOSASE DOMAIN, FHY3/FAR1 FAMILY-RELATED 51 338 - -
Tsu02g04448 690 Pfam FAR1 DNA-binding domain 68 166 IPR004330 -
Tsu02g04448 690 Pfam MULE transposase domain 288 341 IPR018289 -
Tsu02g04448 690 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 342 417 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04448 Tsu-Chr2 53354733 53358866 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tsu02g04448 FAR1 5e-17 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04448 - - ccaj:109802755 492.656