Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tsu02g04443 | ATGGCGGAATACGATCTAACACCACGAATCGCACCAAATCTCGACCGTCATTTAGTTTTCCCTCTCTTagaatttcttcaagaaagacaaTTATACATCGATAACCATATCCTAAAAGCTAAGATCGATCTCTTAAACAACACAAATATGGTTGATTACGCTATGGATATTCACAAGACACTTTATCAAACTGAAGATGTGCCTCAGGAAATGATTGAACGAAGAGCTGATGTTGTTGCTCGTCTTAAGTCTCTTGAAGATGCTGCTGCTCCTCTTGttgcttttcttcagaatccttcTGCTGTTCAGGAATTAAGAGCTGATAAACTTTATAATATTCAGATGCTTAATGATAAATATCAgATCGGTCCTGCACAAATAGAGGCATTATACCAGTATGGCAAATTTCAGTTTGAATGTGGGAACTACTCTGGCGCTGCTGATTATCTTTATCAGTACAGAGCATTATGCACAAACAGTGAAAGGAGTTTGAGTGCATTGTGGGGAAAGCTGGCAGCTGAGATATTGATGCAAAACTGGGATATTGCTCTTGAAGAGCTCAATCGCTTGAAGGAAATAATTGACTCGAAGAATTTTTCATCACCTATAAATCAGGTGCAAAGCAGAATATGGTTGATGCATTGGAGTCTGTTCATCTTTTTCAACCATGACAATGGAAGATCACAGATAATTGATCTGTTTAACCAGGACAAGTATCTTAATGCAATCCAAACTAGCGCTCCACACCTTCTGCGATACTTGGCCACTGCATTTATTGTCAACAAGCGCAGGAGGCCTCAATTCaaagattttataaaagttattCAACTAGAGCAGAATTCATATAAGGACCCTATCACTGAGTTTTTGGCTTGTGTCTATGTCAACTATGACTTTGATGGCGCACAAAAGAAGATGAGGGAGTGTGAAGAAGTAATTCTCAATGATCCCTTCCTTGGTAAACGAGTTGAAGAAAACAACTTCTCAACTGTACCATTAAGGGATGAGTTCCTTGAAAATGCTAGGCTGTTTATTTTTGAGACATACTGCAGAATACACCAACGCATTGACATGGGAGTACTTTCTGAGAAGCTAAATTTGAATTACGAGGAGGCTGAGAGATGGATTGTGAATCTCATCCGCGGCTCAAAGCTTGATGCCAAAATTGACTCTCAATCTGGAACGCTTACCATGGAACCTAATCATCCAAATGTGTATGAGCAGCTGATAGACCATGCAAAGGCCCTTAACACTCGTACTTACAAGCTGGTCACTCAACTTCTGGAACATGCACAACCTCAACCGGCTCGTTGA | 1314 | 0.3866 | MAEYDLTPRIAPNLDRHLVFPLLEFLQERQLYIDNHILKAKIDLLNNTNMVDYAMDIHKTLYQTEDVPQEMIERRADVVARLKSLEDAAAPLVAFLQNPSAVQELRADKLYNIQMLNDKYQIGPAQIEALYQYGKFQFECGNYSGAADYLYQYRALCTNSERSLSALWGKLAAEILMQNWDIALEELNRLKEIIDSKNFSSPINQVQSRIWLMHWSLFIFFNHDNGRSQIIDLFNQDKYLNAIQTSAPHLLRYLATAFIVNKRRRPQFKDFIKVIQLEQNSYKDPITEFLACVYVNYDFDGAQKKMRECEEVILNDPFLGKRVEENNFSTVPLRDEFLENARLFIFETYCRIHQRIDMGVLSEKLNLNYEEAERWIVNLIRGSKLDAKIDSQSGTLTMEPNHPNVYEQLIDHAKALNTRTYKLVTQLLEHAQPQPAR | 437 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tsu02g04443 | 437 | Pfam | eIF3 subunit 6 N terminal domain | 5 | 137 | IPR019010 | - | |
| Tsu02g04443 | 437 | ProSiteProfiles | PCI domain profile. | 219 | 403 | IPR000717 | - | |
| Tsu02g04443 | 437 | SMART | PINT_4 | 332 | 416 | IPR000717 | - | |
| Tsu02g04443 | 437 | PIRSF | Transl_init_eIF3e | 1 | 437 | IPR016650 | GO:0003743|GO:0005737|GO:0005852 | |
| Tsu02g04443 | 437 | SMART | eIF3_N_2 | 5 | 137 | IPR019010 | - | |
| Tsu02g04443 | 437 | SUPERFAMILY | "Winged helix" DNA-binding domain | 332 | 403 | IPR036390 | - | |
| Tsu02g04443 | 437 | SUPERFAMILY | TPR-like | 120 | 193 | IPR011990 | GO:0005515 | |
| Tsu02g04443 | 437 | SMART | motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 | 332 | 416 | - | - | |
| Tsu02g04443 | 437 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E | 1 | 433 | IPR016650 | GO:0003743|GO:0005737|GO:0005852 | |
| Tsu02g04443 | 437 | Hamap | Eukaryotic translation initiation factor 3 subunit E [EIF3E]. | 2 | 429 | IPR016650 | GO:0003743|GO:0005737|GO:0005852 | |
| Tsu02g04443 | 437 | Pfam | PCI domain | 285 | 399 | IPR000717 | - | |
| Tsu02g04443 | 437 | Gene3D | - | 232 | 432 | - | - | |
| Tsu02g04443 | 437 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E | 1 | 433 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Tsu02g04443 | Tsu-Chr2 | 53285515 | 53290046 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Tsu02g04443 | 4 | 437 | Eukaryotic Initiation Factors Gene Family | AT3G57290 | 84.562 | 0.0 | 779 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tsu02g04443 | K03250 | - | gmx:100797748 | 820.461 |