Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04443 ATGGCGGAATACGATCTAACACCACGAATCGCACCAAATCTCGACCGTCATTTAGTTTTCCCTCTCTTagaatttcttcaagaaagacaaTTATACATCGATAACCATATCCTAAAAGCTAAGATCGATCTCTTAAACAACACAAATATGGTTGATTACGCTATGGATATTCACAAGACACTTTATCAAACTGAAGATGTGCCTCAGGAAATGATTGAACGAAGAGCTGATGTTGTTGCTCGTCTTAAGTCTCTTGAAGATGCTGCTGCTCCTCTTGttgcttttcttcagaatccttcTGCTGTTCAGGAATTAAGAGCTGATAAACTTTATAATATTCAGATGCTTAATGATAAATATCAgATCGGTCCTGCACAAATAGAGGCATTATACCAGTATGGCAAATTTCAGTTTGAATGTGGGAACTACTCTGGCGCTGCTGATTATCTTTATCAGTACAGAGCATTATGCACAAACAGTGAAAGGAGTTTGAGTGCATTGTGGGGAAAGCTGGCAGCTGAGATATTGATGCAAAACTGGGATATTGCTCTTGAAGAGCTCAATCGCTTGAAGGAAATAATTGACTCGAAGAATTTTTCATCACCTATAAATCAGGTGCAAAGCAGAATATGGTTGATGCATTGGAGTCTGTTCATCTTTTTCAACCATGACAATGGAAGATCACAGATAATTGATCTGTTTAACCAGGACAAGTATCTTAATGCAATCCAAACTAGCGCTCCACACCTTCTGCGATACTTGGCCACTGCATTTATTGTCAACAAGCGCAGGAGGCCTCAATTCaaagattttataaaagttattCAACTAGAGCAGAATTCATATAAGGACCCTATCACTGAGTTTTTGGCTTGTGTCTATGTCAACTATGACTTTGATGGCGCACAAAAGAAGATGAGGGAGTGTGAAGAAGTAATTCTCAATGATCCCTTCCTTGGTAAACGAGTTGAAGAAAACAACTTCTCAACTGTACCATTAAGGGATGAGTTCCTTGAAAATGCTAGGCTGTTTATTTTTGAGACATACTGCAGAATACACCAACGCATTGACATGGGAGTACTTTCTGAGAAGCTAAATTTGAATTACGAGGAGGCTGAGAGATGGATTGTGAATCTCATCCGCGGCTCAAAGCTTGATGCCAAAATTGACTCTCAATCTGGAACGCTTACCATGGAACCTAATCATCCAAATGTGTATGAGCAGCTGATAGACCATGCAAAGGCCCTTAACACTCGTACTTACAAGCTGGTCACTCAACTTCTGGAACATGCACAACCTCAACCGGCTCGTTGA 1314 0.3866 MAEYDLTPRIAPNLDRHLVFPLLEFLQERQLYIDNHILKAKIDLLNNTNMVDYAMDIHKTLYQTEDVPQEMIERRADVVARLKSLEDAAAPLVAFLQNPSAVQELRADKLYNIQMLNDKYQIGPAQIEALYQYGKFQFECGNYSGAADYLYQYRALCTNSERSLSALWGKLAAEILMQNWDIALEELNRLKEIIDSKNFSSPINQVQSRIWLMHWSLFIFFNHDNGRSQIIDLFNQDKYLNAIQTSAPHLLRYLATAFIVNKRRRPQFKDFIKVIQLEQNSYKDPITEFLACVYVNYDFDGAQKKMRECEEVILNDPFLGKRVEENNFSTVPLRDEFLENARLFIFETYCRIHQRIDMGVLSEKLNLNYEEAERWIVNLIRGSKLDAKIDSQSGTLTMEPNHPNVYEQLIDHAKALNTRTYKLVTQLLEHAQPQPAR 437
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04443 437 Pfam eIF3 subunit 6 N terminal domain 5 137 IPR019010 -
Tsu02g04443 437 ProSiteProfiles PCI domain profile. 219 403 IPR000717 -
Tsu02g04443 437 SMART PINT_4 332 416 IPR000717 -
Tsu02g04443 437 PIRSF Transl_init_eIF3e 1 437 IPR016650 GO:0003743|GO:0005737|GO:0005852
Tsu02g04443 437 SMART eIF3_N_2 5 137 IPR019010 -
Tsu02g04443 437 SUPERFAMILY "Winged helix" DNA-binding domain 332 403 IPR036390 -
Tsu02g04443 437 SUPERFAMILY TPR-like 120 193 IPR011990 GO:0005515
Tsu02g04443 437 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 332 416 - -
Tsu02g04443 437 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E 1 433 IPR016650 GO:0003743|GO:0005737|GO:0005852
Tsu02g04443 437 Hamap Eukaryotic translation initiation factor 3 subunit E [EIF3E]. 2 429 IPR016650 GO:0003743|GO:0005737|GO:0005852
Tsu02g04443 437 Pfam PCI domain 285 399 IPR000717 -
Tsu02g04443 437 Gene3D - 232 432 - -
Tsu02g04443 437 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E 1 433 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Tsu02g04443 Tsu-Chr2 53285515 53290046 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04443 4 437 Eukaryotic Initiation Factors Gene Family AT3G57290 84.562 0.0 779
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04443 K03250 - gmx:100797748 820.461